Plasmid NZ_CP099772.1

Sequence

Nucleotide Information

Accession NZ_CP099772.1
Description Shigella sonnei strain S17BD08233 plasmid p55, complete sequence
Source refseq
Topology circular
Length 108048 bp
GC Content 0.51 %
Created at NCBI July 4, 2022



Biosample

Curated Collection Information
Accession 28885496

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Belgium
Original Query Type name
Coordinates (Lat/Lon) 50.64/4.67
Address Belgium

ECOSYSTEM
Original Query Homo sapiens,whole genome
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

LC567094.1 See Comparison
LC567090.1 See Comparison
LC567084.1 See Comparison
LC567056.1 See Comparison
LC567050.1 See Comparison
NZ_MH847571.1 See Comparison
NZ_CP053677.1 See Comparison
NZ_LT985280.1 See Comparison
NZ_KT779550.1 See Comparison
CP099061.1 See Comparison
CP099064.1 See Comparison
CP099067.1 See Comparison
CP099070.1 See Comparison
CP099074.1 See Comparison
CP099077.1 See Comparison
CP099091.1 See Comparison
CP099094.1 See Comparison
CP099097.1 See Comparison
NZ_CP091678.1 See Comparison
NZ_CP094199.1 See Comparison
NZ_CP094200.1 See Comparison
NZ_OL689363.1 See Comparison
NZ_CP053677.1 See Comparison
LC567094.1 See Comparison
LC567090.1 See Comparison
CP067953.1 See Comparison
LC567084.1 See Comparison
LC567056.1 See Comparison
LC567050.1 See Comparison
NZ_KT779550.1 See Comparison
NZ_MH847571.1 See Comparison
CP099061.1 See Comparison
NZ_LT985280.1 See Comparison
CP099064.1 See Comparison
CP099067.1 See Comparison
CP099070.1 See Comparison
CP099074.1 See Comparison
CP099077.1 See Comparison
CP099091.1 See Comparison
CP099094.1 See Comparison
CP099097.1 See Comparison
NZ_OL689363.1 See Comparison
NZ_CP091678.1 See Comparison
NZ_CP094199.1 See Comparison
NZ_CP094200.1 See Comparison
CP067953.1 See Comparison
LC567094.1 See Comparison
LC567090.1 See Comparison
LC567084.1 See Comparison
LC567056.1 See Comparison
LC567050.1 See Comparison
NZ_KT779550.1 See Comparison
NZ_MH847571.1 See Comparison
NZ_CP053677.1 See Comparison
NZ_OL689363.1 See Comparison
CP099061.1 See Comparison
CP099064.1 See Comparison
CP099067.1 See Comparison
CP099070.1 See Comparison
CP099074.1 See Comparison
CP099077.1 See Comparison
CP099091.1 See Comparison
CP099094.1 See Comparison
CP099097.1 See Comparison
NZ_LT985280.1 See Comparison
NZ_CP099772.1 See Comparison
CP067953.1 See Comparison
NZ_CP094199.1 See Comparison
NZ_CP094200.1 See Comparison
NZ_CP091678.1 See Comparison
NZ_MH847571.1 See Comparison
LC567094.1 See Comparison
LC567090.1 See Comparison
LC567084.1 See Comparison
LC567056.1 See Comparison
LC567050.1 See Comparison
NZ_CP053677.1 See Comparison
NZ_LT985280.1 See Comparison
NZ_KT779550.1 See Comparison
CP099061.1 See Comparison
CP099064.1 See Comparison
CP099067.1 See Comparison
CP099070.1 See Comparison
CP099074.1 See Comparison
CP099077.1 See Comparison
CP099091.1 See Comparison
CP099094.1 See Comparison
CP099097.1 See Comparison
NZ_CP091678.1 See Comparison
NZ_OL689363.1 See Comparison
NZ_CP094199.1 See Comparison
NZ_CP094200.1 See Comparison
CP067953.1 See Comparison
NZ_CP094199.1 See Comparison
LC567094.1 See Comparison
LC567090.1 See Comparison
LC567084.1 See Comparison
LC567056.1 See Comparison
LC567050.1 See Comparison
NZ_CP053677.1 See Comparison
NZ_KT779550.1 See Comparison
NZ_MH847571.1 See Comparison
NZ_LT985280.1 See Comparison
CP099061.1 See Comparison
CP099064.1 See Comparison
CP099067.1 See Comparison
CP099070.1 See Comparison
CP099074.1 See Comparison
CP099077.1 See Comparison
CP099091.1 See Comparison
CP099094.1 See Comparison
CP099097.1 See Comparison
NZ_OL689363.1 See Comparison
NZ_CP094200.1 See Comparison
LC567094.1 See Comparison
NZ_CP091678.1 See Comparison
CP067953.1 See Comparison
LC567090.1 See Comparison
LC567084.1 See Comparison
LC567056.1 See Comparison
LC567050.1 See Comparison
NZ_CP053677.1 See Comparison
NZ_OL689363.1 See Comparison
NZ_MH847571.1 See Comparison
NZ_KT779550.1 See Comparison
NZ_LT985280.1 See Comparison
CP099061.1 See Comparison
CP099064.1 See Comparison
CP099067.1 See Comparison
CP099070.1 See Comparison
CP099074.1 See Comparison
CP099077.1 See Comparison
CP099091.1 See Comparison
CP099094.1 See Comparison
CP099097.1 See Comparison
NZ_CP091678.1 See Comparison
NZ_CP094199.1 See Comparison
NZ_CP094200.1 See Comparison
CP067953.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore