Plasmid LC567057.1

Sequence

Nucleotide Information

Accession LC567057.1
Description Escherichia coli S40-2 plasmid pS40-2 DNA, complete sequence
Source insd
Topology circular
Length 104027 bp
GC Content 0.50 %
Created at NCBI April 3, 2024



Biosample

Curated Collection Information
Accession 40745242

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP


Similar Plasmids

based on Mash distance

LC567094.1 See Comparison
LC567056.1 See Comparison
LC567050.1 See Comparison
NZ_KT779550.1 See Comparison
NZ_MN419433.1 See Comparison
NZ_MN419434.1 See Comparison
CP067953.1 See Comparison
CP099061.1 See Comparison
CP099064.1 See Comparison
CP099067.1 See Comparison
CP099070.1 See Comparison
CP099074.1 See Comparison
CP099077.1 See Comparison
CP099094.1 See Comparison
CP099097.1 See Comparison
LC567094.1 See Comparison
LC567056.1 See Comparison
LC567050.1 See Comparison
NZ_KT779550.1 See Comparison
CP099061.1 See Comparison
NZ_MN419433.1 See Comparison
NZ_MN419434.1 See Comparison
CP099064.1 See Comparison
CP099067.1 See Comparison
CP099070.1 See Comparison
CP099074.1 See Comparison
CP099077.1 See Comparison
CP099094.1 See Comparison
CP099097.1 See Comparison
CP067953.1 See Comparison
LC567094.1 See Comparison
LC567056.1 See Comparison
LC567050.1 See Comparison
NZ_KT779550.1 See Comparison
NZ_MN419433.1 See Comparison
NZ_MN419434.1 See Comparison
CP099097.1 See Comparison
LC567094.1 See Comparison
CP099061.1 See Comparison
CP099064.1 See Comparison
CP099067.1 See Comparison
CP099070.1 See Comparison
CP099074.1 See Comparison
CP099077.1 See Comparison
CP099094.1 See Comparison
CP067953.1 See Comparison
LC567056.1 See Comparison
LC567050.1 See Comparison
NZ_KT779550.1 See Comparison
NZ_MN419433.1 See Comparison
NZ_MN419434.1 See Comparison
CP067953.1 See Comparison
CP099061.1 See Comparison
CP099064.1 See Comparison
CP099067.1 See Comparison
CP099070.1 See Comparison
CP099074.1 See Comparison
CP099077.1 See Comparison
CP099094.1 See Comparison
CP099097.1 See Comparison
LC567094.1 See Comparison
LC567056.1 See Comparison
LC567050.1 See Comparison
NZ_MN419433.1 See Comparison
NZ_KT779550.1 See Comparison
NZ_MN419434.1 See Comparison
CP099061.1 See Comparison
CP099064.1 See Comparison
CP099067.1 See Comparison
CP099070.1 See Comparison
CP099074.1 See Comparison
CP099077.1 See Comparison
CP099094.1 See Comparison
CP099097.1 See Comparison
LC567094.1 See Comparison
NZ_KT779550.1 See Comparison
CP067953.1 See Comparison
CP067953.1 See Comparison
LC567094.1 See Comparison
LC567056.1 See Comparison
LC567050.1 See Comparison
NZ_MN419433.1 See Comparison
NZ_MN419434.1 See Comparison
CP099061.1 See Comparison
CP099064.1 See Comparison
CP099067.1 See Comparison
CP099070.1 See Comparison
CP099074.1 See Comparison
CP099077.1 See Comparison
CP099094.1 See Comparison
CP099097.1 See Comparison
LC567057.1 See Comparison
LC567056.1 See Comparison
LC567050.1 See Comparison
NZ_KT779550.1 See Comparison
CP067953.1 See Comparison
NZ_MN419433.1 See Comparison
NZ_MN419434.1 See Comparison
CP099061.1 See Comparison
CP099064.1 See Comparison
CP099067.1 See Comparison
CP099070.1 See Comparison
CP099074.1 See Comparison
CP099077.1 See Comparison
CP099094.1 See Comparison
CP099097.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplussul2copy
amrfinderplusblaCTX-M-1copy
amrfinderplusaph(3')-Iacopy
PGAGrepZcopy
PGAGIS1294 transposasecopy
PGAGhypothetical proteincopy
PGAGtnpAcopy
PGAGaminoglycoside phosphotransferase APH(3')copy
PGAGtnpAcopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 129 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_019097MOBP4754850241plus95.2129901686
oriTHM021326MOBP4708647178minus1001004.37e-41172
repliconCP001118IncI-gamma/K1461077plus10010001906
mate-pair-formationNC_019097_00056MPF_I5031452575minus98.8069201446
mate-pair-formationNC_022267_00057MPF_I6074561944minus99.251000769
mate-pair-formationNC_019111_00038MPF_I6669867099minus95.5221001.17e-50178
mate-pair-formationNC_023290_00086MPF_I6715367677minus99.4291003.4400000000000003e-100322
mate-pair-formationNC_015965_00072MPF_I6768068381minus99.5731004.56e-153477
mate-pair-formationNC_019097_00075MPF_I6967670656minus99.6941000656
mate-pair-formationNC_022267_00069MPF_I7071271359minus98.148916.17e-142445
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2