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v. 2024_05_31_v2
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Antimicrobial Resistance Genes
Typing
Plasmid LC567084.1
Sequence
Nucleotide Information
Accession
LC567084.1
Description
Escherichia coli S13 plasmid pS13 DNA, complete sequence
Source
insd
Topology
circular
Length
109827 bp
GC Content
0.51 %
Created at NCBI
April 3, 2024
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Biosample
Curated Collection Information
Accession
40745269
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Japan
Original Query Type
name
Coordinates (Lat/Lon)
36.57/139.24
Address
Japan
ECOSYSTEM
Original Query
None
Classification
None
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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based on Mash distance
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CP099097.1
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NZ_CP099772.1
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CP067953.1
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NZ_CP094199.1
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NZ_CP094200.1
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LC567094.1
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NZ_CP026941.2
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LC567083.1
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LC567058.1
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LC567056.1
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LC567050.1
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NZ_CP026941.2
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NZ_MH847571.1
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NZ_LT985280.1
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NZ_CP094199.1
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NZ_CP094200.1
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CP067953.1
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NZ_CP053677.1
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NZ_KT779550.1
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CP099061.1
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CP099064.1
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CP099067.1
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CP099070.1
See Comparison
CP099074.1
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CP099077.1
See Comparison
CP099091.1
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CP099094.1
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CP099097.1
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NZ_OL689363.1
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NZ_CP099772.1
See Comparison
NZ_CP053677.1
See Comparison
LC567094.1
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LC567084.1
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LC567083.1
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LC567058.1
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LC567056.1
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LC567050.1
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NZ_CP094199.1
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NZ_KT779550.1
See Comparison
NZ_OL689363.1
See Comparison
NZ_CP099772.1
See Comparison
NZ_MH847571.1
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NZ_LT985280.1
See Comparison
CP099061.1
See Comparison
CP099064.1
See Comparison
CP099067.1
See Comparison
CP099070.1
See Comparison
CP099074.1
See Comparison
CP099077.1
See Comparison
CP099091.1
See Comparison
CP099094.1
See Comparison
CP099097.1
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NZ_CP094200.1
See Comparison
NZ_CP026941.2
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CP067953.1
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NZ_MH847571.1
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LC567094.1
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LC567083.1
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LC567058.1
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LC567056.1
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LC567050.1
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NZ_CP053677.1
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NZ_LT985280.1
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NZ_KT779550.1
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CP099061.1
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CP099064.1
See Comparison
CP099067.1
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CP099070.1
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CP099074.1
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CP099077.1
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CP099091.1
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CP099094.1
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CP099097.1
See Comparison
NZ_CP094199.1
See Comparison
NZ_OL689363.1
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NZ_CP094200.1
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CP067953.1
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NZ_CP099772.1
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NZ_OL689363.1
See Comparison
NZ_CP026941.2
See Comparison
LC567094.1
See Comparison
LC567083.1
See Comparison
LC567058.1
See Comparison
LC567056.1
See Comparison
LC567050.1
See Comparison
NZ_CP053677.1
See Comparison
NZ_KT779550.1
See Comparison
NZ_MH847571.1
See Comparison
NZ_LT985280.1
See Comparison
CP099061.1
See Comparison
CP099064.1
See Comparison
CP099067.1
See Comparison
CP099070.1
See Comparison
CP099074.1
See Comparison
CP099077.1
See Comparison
CP099091.1
See Comparison
CP099094.1
See Comparison
CP099097.1
See Comparison
NZ_CP099772.1
See Comparison
NZ_CP026941.2
See Comparison
NZ_CP094199.1
See Comparison
NZ_CP094200.1
See Comparison
CP067953.1
See Comparison
NZ_KT779550.1
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LC567094.1
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LC567083.1
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LC567058.1
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LC567056.1
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LC567050.1
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NZ_CP053677.1
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NZ_MH847571.1
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NZ_LT985280.1
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Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore