Plasmid CP031285.1

Sequence

Nucleotide Information

Accession CP031285.1
Description Escherichia fergusonii strain 40A plasmid p46_40A, complete sequence
Source insd
Topology circular
Length 45869 bp
GC Content 0.43 %
Created at NCBI Aug. 13, 2018



Biosample

Curated Collection Information
Accession 9217788

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Brazil,Sao Paulo
Original Query Type name
Coordinates (Lat/Lon) -21.95/-49.02
Address Brazil,Sao Paulo

ECOSYSTEM
Original Query cloacal swabs,healthy broiler chicken
Classification host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP082564.1 See Comparison
CP082568.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
CP082605.1 See Comparison
AP028813.1 See Comparison
NZ_CP123662.1 See Comparison
CP082564.1 See Comparison
CP082748.1 See Comparison
CP066320.1 See Comparison
CP082568.1 See Comparison
CP082657.1 See Comparison
CP082605.1 See Comparison
AP028813.1 See Comparison
NZ_CP123662.1 See Comparison
CP082605.1 See Comparison
CP066320.1 See Comparison
CP082564.1 See Comparison
CP082568.1 See Comparison
CP082564.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
NZ_CP123662.1 See Comparison
AP028813.1 See Comparison
CP066320.1 See Comparison
CP082568.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
CP082605.1 See Comparison
AP028813.1 See Comparison
AP028813.1 See Comparison
NZ_CP123662.1 See Comparison
CP066320.1 See Comparison
CP082605.1 See Comparison
CP082564.1 See Comparison
CP082568.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
NZ_CP123662.1 See Comparison
CP066320.1 See Comparison
CP066320.1 See Comparison
CP031285.1 See Comparison
NZ_CP123662.1 See Comparison
CP082564.1 See Comparison
CP082568.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
CP082605.1 See Comparison
AP028813.1 See Comparison
CP082564.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
CP082605.1 See Comparison
CP082568.1 See Comparison
NZ_CP123662.1 See Comparison
AP028813.1 See Comparison
CP066320.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2