Plasmid NZ_CP039444.1

Sequence

Nucleotide Information

Accession NZ_CP039444.1
Description Salmonella enterica subsp. enterica serovar Infantis strain VNSEC002 plasmid pCFSAN086834, complete sequence
Source refseq
Topology circular
Length 321889 bp
GC Content 0.50 %
Created at NCBI July 4, 2020



Assembly

Genome Data Information

Accession GCF_013377335.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 11355817

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 14.06N;108.28E
Original Query Type coordinates
Coordinates (Lat/Lon) 14.06/108.28
Address Kon Dơng, Mang Yang District, Gia Lai Province, Vietnam

ECOSYSTEM
Original Query chicken
Classification host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP093374.1 See Comparison
CP092302.1 See Comparison
CP092298.1 See Comparison
CP092295.1 See Comparison
CP082522.1 See Comparison
CP082539.1 See Comparison
CP074344.1 See Comparison
CP074342.1 See Comparison
NZ_CP016409.1 See Comparison
NZ_CP016407.1 See Comparison
NZ_CP016413.1 See Comparison
NZ_CP016411.1 See Comparison
CP038508.1 See Comparison
NZ_CP148841.1 See Comparison
CP100655.1 See Comparison
NZ_CP133182.1 See Comparison
NZ_CP148807.1 See Comparison
NZ_CP148839.1 See Comparison
NZ_CP148811.1 See Comparison
NZ_CP148837.1 See Comparison
NZ_CP148823.1 See Comparison
NZ_CP148829.1 See Comparison
NZ_CP148795.1 See Comparison
NZ_CP148798.1 See Comparison
NZ_CP148791.1 See Comparison
NZ_CP148815.1 See Comparison
NZ_CP148802.1 See Comparison
NZ_CP148833.1 See Comparison
NZ_CP148827.1 See Comparison
NZ_CP148847.1 See Comparison
CP070303.1 See Comparison
CP148853.1 See Comparison
CP148869.1 See Comparison
CP148781.1 See Comparison
CP052818.1 See Comparison
CP052840.1 See Comparison
CP052838.1 See Comparison
CP052836.1 See Comparison
CP052832.1 See Comparison
CP052828.1 See Comparison
CP052816.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP052795.1 See Comparison
CP052804.1 See Comparison
CP052802.1 See Comparison
CP052788.1 See Comparison
CP052786.1 See Comparison
CP052783.1 See Comparison
CP052779.1 See Comparison
NZ_CP039444.1 See Comparison
NZ_CP039446.1 See Comparison
NZ_CP039442.1 See Comparison
NZ_CP099762.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119985.1 See Comparison
NZ_CP119983.1 See Comparison
CP066336.1 See Comparison
CP082522.1 See Comparison
CP082539.1 See Comparison
NZ_OW849859.1 See Comparison
NZ_CP093374.1 See Comparison
CP092302.1 See Comparison
CP092298.1 See Comparison
CP092295.1 See Comparison
CP074344.1 See Comparison
CP074342.1 See Comparison
CP052840.1 See Comparison
NZ_CP016409.1 See Comparison
NZ_CP016407.1 See Comparison
NZ_CP016413.1 See Comparison
NZ_CP016411.1 See Comparison
CP100655.1 See Comparison
NZ_CP148811.1 See Comparison
NZ_CP148837.1 See Comparison
NZ_CP148798.1 See Comparison
NZ_CP148791.1 See Comparison
NZ_CP039446.1 See Comparison
NZ_CP039442.1 See Comparison
CP052818.1 See Comparison
CP038508.1 See Comparison
NZ_CP133182.1 See Comparison
NZ_CP148841.1 See Comparison
NZ_CP148807.1 See Comparison
NZ_CP148839.1 See Comparison
NZ_CP148815.1 See Comparison
NZ_CP148802.1 See Comparison
NZ_CP148833.1 See Comparison
NZ_CP148827.1 See Comparison
NZ_CP148847.1 See Comparison
NZ_CP148823.1 See Comparison
NZ_CP148829.1 See Comparison
NZ_CP148795.1 See Comparison
CP148853.1 See Comparison
CP148869.1 See Comparison
CP148781.1 See Comparison
CP052838.1 See Comparison
CP052836.1 See Comparison
CP052832.1 See Comparison
CP052828.1 See Comparison
CP052816.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP052795.1 See Comparison
CP052804.1 See Comparison
CP052802.1 See Comparison
CP052788.1 See Comparison
CP052786.1 See Comparison
CP052783.1 See Comparison
CP052779.1 See Comparison
NZ_CP099762.1 See Comparison
CP070303.1 See Comparison
CP066336.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119985.1 See Comparison
NZ_CP119983.1 See Comparison
NZ_CP093374.1 See Comparison
NZ_OW849859.1 See Comparison
CP082539.1 See Comparison
CP092302.1 See Comparison
CP092298.1 See Comparison
CP092295.1 See Comparison
NZ_CP133182.1 See Comparison
CP082522.1 See Comparison
CP100655.1 See Comparison
CP074344.1 See Comparison
CP074342.1 See Comparison
NZ_CP016409.1 See Comparison
NZ_CP016407.1 See Comparison
NZ_CP016413.1 See Comparison
NZ_CP016411.1 See Comparison
CP038508.1 See Comparison
CP052818.1 See Comparison
NZ_CP148839.1 See Comparison
NZ_CP148847.1 See Comparison
NZ_CP148823.1 See Comparison
NZ_CP148829.1 See Comparison
NZ_CP148795.1 See Comparison
CP148853.1 See Comparison
CP148869.1 See Comparison
CP148781.1 See Comparison
NZ_CP039442.1 See Comparison
NZ_CP148841.1 See Comparison
NZ_CP148807.1 See Comparison
NZ_CP148811.1 See Comparison
NZ_CP148837.1 See Comparison
NZ_CP148798.1 See Comparison
NZ_CP148791.1 See Comparison
NZ_CP148815.1 See Comparison
NZ_CP148802.1 See Comparison
NZ_CP148833.1 See Comparison
NZ_CP148827.1 See Comparison
NZ_CP039446.1 See Comparison
CP070303.1 See Comparison
CP052840.1 See Comparison
CP052838.1 See Comparison
CP052836.1 See Comparison
CP052832.1 See Comparison
CP052828.1 See Comparison
CP052816.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP052795.1 See Comparison
CP052804.1 See Comparison
CP052802.1 See Comparison
CP052788.1 See Comparison
CP052786.1 See Comparison
CP052783.1 See Comparison
CP052779.1 See Comparison
NZ_OW849859.1 See Comparison
CP066336.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119985.1 See Comparison
NZ_CP119983.1 See Comparison
NZ_CP099762.1 See Comparison
CP092295.1 See Comparison
NZ_CP093374.1 See Comparison
CP082522.1 See Comparison
CP092302.1 See Comparison
CP092298.1 See Comparison
CP038508.1 See Comparison
CP074344.1 See Comparison
CP074342.1 See Comparison
NZ_CP016409.1 See Comparison
NZ_CP016407.1 See Comparison
NZ_CP016413.1 See Comparison
NZ_CP016411.1 See Comparison
CP082539.1 See Comparison
CP148853.1 See Comparison
NZ_CP133182.1 See Comparison
CP100655.1 See Comparison
NZ_CP148841.1 See Comparison
NZ_CP148807.1 See Comparison
NZ_CP148839.1 See Comparison
NZ_CP148811.1 See Comparison
NZ_CP148837.1 See Comparison
NZ_CP148798.1 See Comparison
NZ_CP148791.1 See Comparison
NZ_CP148815.1 See Comparison
NZ_CP148802.1 See Comparison
NZ_CP148833.1 See Comparison
NZ_CP148827.1 See Comparison
NZ_CP148847.1 See Comparison
NZ_CP148823.1 See Comparison
NZ_CP148829.1 See Comparison
NZ_CP148795.1 See Comparison
CP148869.1 See Comparison
CP148781.1 See Comparison
NZ_CP039442.1 See Comparison
CP052840.1 See Comparison
NZ_CP039446.1 See Comparison
CP052818.1 See Comparison
CP052838.1 See Comparison
CP052836.1 See Comparison
CP052832.1 See Comparison
CP052828.1 See Comparison
CP052816.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP052795.1 See Comparison
CP052804.1 See Comparison
CP052802.1 See Comparison
CP052788.1 See Comparison
CP052786.1 See Comparison
CP052783.1 See Comparison
CP052779.1 See Comparison
NZ_CP099762.1 See Comparison
CP070303.1 See Comparison
CP066336.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119985.1 See Comparison
NZ_CP119983.1 See Comparison
NZ_OW849859.1 See Comparison
NZ_CP093374.1 See Comparison
CP082539.1 See Comparison
CP092302.1 See Comparison
CP092298.1 See Comparison
CP092295.1 See Comparison
CP100655.1 See Comparison
CP074344.1 See Comparison
CP074342.1 See Comparison
NZ_CP016409.1 See Comparison
NZ_CP016407.1 See Comparison
NZ_CP016413.1 See Comparison
NZ_CP016411.1 See Comparison
CP038508.1 See Comparison
CP082522.1 See Comparison
NZ_CP148841.1 See Comparison
NZ_CP133182.1 See Comparison
NZ_CP148807.1 See Comparison
NZ_CP148839.1 See Comparison
NZ_CP148811.1 See Comparison
NZ_CP148837.1 See Comparison
NZ_CP148798.1 See Comparison
NZ_CP148791.1 See Comparison
NZ_CP148815.1 See Comparison
NZ_CP148802.1 See Comparison
NZ_CP148833.1 See Comparison
NZ_CP148827.1 See Comparison
NZ_CP148847.1 See Comparison
NZ_CP148823.1 See Comparison
NZ_CP148829.1 See Comparison
NZ_CP148795.1 See Comparison
CP148853.1 See Comparison
CP148869.1 See Comparison
CP148781.1 See Comparison
NZ_CP039446.1 See Comparison
NZ_CP039442.1 See Comparison
NZ_CP119987.1 See Comparison
CP052818.1 See Comparison
CP052840.1 See Comparison
CP052838.1 See Comparison
CP052836.1 See Comparison
CP052832.1 See Comparison
CP052828.1 See Comparison
CP052816.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP052795.1 See Comparison
CP052804.1 See Comparison
CP052802.1 See Comparison
CP052788.1 See Comparison
CP052786.1 See Comparison
CP052783.1 See Comparison
CP052779.1 See Comparison
CP070303.1 See Comparison
CP066336.1 See Comparison
NZ_CP119983.1 See Comparison
NZ_CP119985.1 See Comparison
NZ_CP099762.1 See Comparison
NZ_OW849859.1 See Comparison
CP092302.1 See Comparison
NZ_CP093374.1 See Comparison
CP092298.1 See Comparison
CP092295.1 See Comparison
CP082522.1 See Comparison
CP082539.1 See Comparison
NZ_CP133182.1 See Comparison
CP074344.1 See Comparison
CP074342.1 See Comparison
NZ_CP016409.1 See Comparison
NZ_CP016407.1 See Comparison
NZ_CP016413.1 See Comparison
NZ_CP016411.1 See Comparison
CP038508.1 See Comparison
CP100655.1 See Comparison
CP052818.1 See Comparison
NZ_CP148841.1 See Comparison
NZ_CP148807.1 See Comparison
NZ_CP148839.1 See Comparison
NZ_CP148811.1 See Comparison
NZ_CP148837.1 See Comparison
NZ_CP148798.1 See Comparison
NZ_CP148791.1 See Comparison
NZ_CP148815.1 See Comparison
NZ_CP148802.1 See Comparison
NZ_CP148833.1 See Comparison
NZ_CP148827.1 See Comparison
NZ_CP148847.1 See Comparison
NZ_CP148823.1 See Comparison
NZ_CP148829.1 See Comparison
NZ_CP148795.1 See Comparison
CP148853.1 See Comparison
CP148869.1 See Comparison
CP148781.1 See Comparison
NZ_CP039446.1 See Comparison
NZ_CP039442.1 See Comparison
CP052840.1 See Comparison
CP052838.1 See Comparison
CP052836.1 See Comparison
CP052832.1 See Comparison
CP052828.1 See Comparison
CP052816.1 See Comparison
CP052808.1 See Comparison
CP052799.1 See Comparison
CP052795.1 See Comparison
CP052804.1 See Comparison
CP052802.1 See Comparison
CP052788.1 See Comparison
CP052786.1 See Comparison
CP052783.1 See Comparison
CP052779.1 See Comparison
CP070303.1 See Comparison
NZ_CP119987.1 See Comparison
NZ_CP119985.1 See Comparison
NZ_CP119983.1 See Comparison
NZ_CP099762.1 See Comparison
NZ_OW849859.1 See Comparison
CP066336.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore