Plasmid NZ_OX442404.1

Sequence

Nucleotide Information

Accession NZ_OX442404.1
Description Salmonella enterica subsp. enterica serovar Agona isolate pure strain plasmid 2, complete sequence
Source refseq
Topology circular
Length 277357 bp
GC Content 0.46 %
Created at NCBI March 14, 2023



Assembly

Genome Data Information

Accession GCF_949361515.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 33564067

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP099761.1 See Comparison
NZ_CP099763.1 See Comparison
NZ_CP053693.1 See Comparison
OW968418.1 See Comparison
OW849458.1 See Comparison
OW849370.1 See Comparison
CP088423.1 See Comparison
NZ_OP950833.1 See Comparison
NZ_CP041734.1 See Comparison
NZ_AP023448.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP053693.1 See Comparison
NZ_CP064657.1 See Comparison
NZ_CP099761.1 See Comparison
NZ_CP099763.1 See Comparison
NZ_CP041734.1 See Comparison
OW968418.1 See Comparison
OW849458.1 See Comparison
OW849370.1 See Comparison
CP088423.1 See Comparison
NZ_CP064657.1 See Comparison
NZ_OP950833.1 See Comparison
NZ_AP023448.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP099761.1 See Comparison
NZ_CP099763.1 See Comparison
NZ_CP053693.1 See Comparison
OW968418.1 See Comparison
NZ_CP041734.1 See Comparison
OW849458.1 See Comparison
OW849370.1 See Comparison
CP088423.1 See Comparison
NZ_OP950833.1 See Comparison
NZ_AP023448.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP099761.1 See Comparison
NZ_CP064657.1 See Comparison
NZ_CP099763.1 See Comparison
NZ_CP053693.1 See Comparison
OW849458.1 See Comparison
OW968418.1 See Comparison
OW849370.1 See Comparison
NZ_CP041734.1 See Comparison
CP088423.1 See Comparison
NZ_CP064657.1 See Comparison
NZ_OP950833.1 See Comparison
NZ_AP023448.1 See Comparison
NZ_AP022511.1 See Comparison
OW968418.1 See Comparison
NZ_CP099761.1 See Comparison
NZ_CP099763.1 See Comparison
NZ_CP053693.1 See Comparison
CP088423.1 See Comparison
OW849458.1 See Comparison
OW849370.1 See Comparison
NZ_OP950833.1 See Comparison
NZ_CP041734.1 See Comparison
NZ_AP023448.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP041734.1 See Comparison
NZ_CP064657.1 See Comparison
NZ_CP099761.1 See Comparison
NZ_CP099763.1 See Comparison
NZ_CP053693.1 See Comparison
OW968418.1 See Comparison
OW849458.1 See Comparison
OW849370.1 See Comparison
CP088423.1 See Comparison
OW968418.1 See Comparison
NZ_OP950833.1 See Comparison
NZ_AP023448.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP064657.1 See Comparison
NZ_CP099761.1 See Comparison
NZ_CP099763.1 See Comparison
NZ_CP053693.1 See Comparison
OW849458.1 See Comparison
OW849370.1 See Comparison
CP088423.1 See Comparison
NZ_CP041734.1 See Comparison
NZ_OX442404.1 See Comparison
NZ_OP950833.1 See Comparison
NZ_AP023448.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP064657.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplustet(A)copy
amrfinderplusant(2'')-Iacopy
amrfinderplussul1copy
amrfinderplussul1copy
amrfinderplussul1copy
amrfinderplusblaCTX-M-9copy
amrfinderplusaadA2copy
amrfinderplusaadA2copy
amrfinderplusdfrA16copy
rgiaadA2copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 308 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_012555_00231MOBH7542778570minus10010002135
replicon000340__KU353730rep_cluster_1088219476220438minus98.54610001701
mate-pair-formationNC_005211_00207MPF_F7334375424minus10010001423
mate-pair-formationNC_005211_00200MPF_F8350184913plus1001000933
mate-pair-formationNC_005211_00030MPF_F244066245124minus1001000737
mate-pair-formationNC_021845_00017MPF_F245266246774minus99.6021000997
mate-pair-formationNC_005211_00012MPF_T265763268441minus10010001873
mate-pair-formationNC_009838_00006MPF_F272582273850minus99.5271000800
mate-pair-formationNC_005211_00005MPF_F273853274638minus1001002.33e-172533
oriTNC_017500MOBH8187482464minus10010001092
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 11 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2