Plasmid NZ_OP950833.1

Sequence

Nucleotide Information

Accession NZ_OP950833.1
Description Enterobacter hormaechei strain 17620 plasmid pMCR9-17620, complete sequence
Source refseq
Topology circular
Length 276870 bp
GC Content 0.46 %
Created at NCBI May 22, 2023



Biosample

Curated Collection Information
Accession 22959208

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 50.07N;14.41E
Original Query Type coordinates
Coordinates (Lat/Lon) 50.07/14.41
Address 484/4, Vltavská, Smíchov, Prague, obvod Praha 5, Prague, 150 00, Czechia

ECOSYSTEM
Original Query Homo sapiens,wound swab
Classification host_associated,wound
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

OW849458.1 See Comparison
OW849370.1 See Comparison
NZ_CP041734.1 See Comparison
NZ_AP023448.1 See Comparison
NZ_OP950833.1 See Comparison
NZ_OX442404.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP099761.1 See Comparison
NZ_CP064657.1 See Comparison
NZ_CP041734.1 See Comparison
NZ_CP053693.1 See Comparison
OW849458.1 See Comparison
OW849370.1 See Comparison
NZ_OX442404.1 See Comparison
NZ_OX442404.1 See Comparison
NZ_AP023448.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP053693.1 See Comparison
OW849458.1 See Comparison
OW849370.1 See Comparison
NZ_CP064657.1 See Comparison
NZ_CP099761.1 See Comparison
NZ_CP041734.1 See Comparison
NZ_AP023448.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP053693.1 See Comparison
NZ_CP064657.1 See Comparison
OW849458.1 See Comparison
NZ_CP099761.1 See Comparison
NZ_OX442404.1 See Comparison
OW849370.1 See Comparison
NZ_CP041734.1 See Comparison
NZ_AP023448.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP041734.1 See Comparison
NZ_CP099761.1 See Comparison
NZ_CP064657.1 See Comparison
NZ_CP053693.1 See Comparison
OW849458.1 See Comparison
OW849370.1 See Comparison
NZ_OX442404.1 See Comparison
NZ_CP064657.1 See Comparison
NZ_CP099761.1 See Comparison
NZ_AP023448.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP053693.1 See Comparison
NZ_AP023448.1 See Comparison
NZ_OX442404.1 See Comparison
OW849458.1 See Comparison
OW849370.1 See Comparison
NZ_CP041734.1 See Comparison
NZ_AP022511.1 See Comparison
OW849458.1 See Comparison
NZ_CP064657.1 See Comparison
NZ_CP099761.1 See Comparison
NZ_CP053693.1 See Comparison
OW849370.1 See Comparison
NZ_CP041734.1 See Comparison
NZ_OX442404.1 See Comparison
NZ_CP064657.1 See Comparison
NZ_AP023448.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP053693.1 See Comparison
NZ_CP099761.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusmcr-9.2copy
amrfinderplusmerEcopy
amrfinderplusterDcopy
amrfinderplusterWcopy
amrfinderplusterZcopy
amrfinderplussul1copy
amrfinderplussul1copy
amrfinderplussul1copy
amrfinderplusblaCTX-M-9copy
amrfinderplusaadA2copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 310 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_012555_00231MOBH170408173551plus10010002135
mate-pair-formationNC_005211_00005MPF_F27583543plus1001002.33e-172533
mate-pair-formationNC_009838_00006MPF_F35464814plus99.5271000800
mate-pair-formationNC_005211_00012MPF_T895511633plus10010001873
mate-pair-formationNC_021845_00017MPF_F3062232130plus99.6021000997
mate-pair-formationNC_005211_00030MPF_F3227233330plus1001000737
mate-pair-formationNC_005211_00200MPF_F164065165477minus1001000933
mate-pair-formationNC_005211_00207MPF_F173554175635plus10010001423
repliconBX664015IncHI2A211840plus10010001164
replicon000340__KU353730rep_cluster_10885695857920plus98.54610001701
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 11 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2