Plasmid NZ_OW967980.1

Sequence

Nucleotide Information

Accession	NZ_OW967980.1
Description	Escherichia coli isolate 10 plasmid P5, complete sequence
Source	refseq
Topology	circular
Length	12602 bp
GC Content	0.46 %
Created at NCBI	May 20, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_905330215.2
Assembly Coverage	243

Biosample

Curated Collection Information

Accession	22316788

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Spain
Original Query Type	name
Coordinates (Lat/Lon)	39.33/-4.84
Address	Spain

ECOSYSTEM

Original Query	Homo sapiens,Hospital Universitario Mutua de Terrassa (Terrassa)
Classification	anthropogenic,hospital,host_associated,location
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	diseased
DOID/SYMP	Disease (DOID:4 ) A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

CP056789.1	See Comparison
NZ_CP103517.1	See Comparison
NZ_CP116990.1	See Comparison
NZ_CP103573.1	See Comparison
NZ_OW967980.1	See Comparison
NZ_OW968129.1	See Comparison
NZ_CP055094.1	See Comparison
NZ_CP019003.1	See Comparison
NZ_CP042340.1	See Comparison
NZ_CP042590.1	See Comparison
NZ_CP115372.1	See Comparison
NZ_CP103517.1	See Comparison
NZ_CP116997.1	See Comparison
CP056789.1	See Comparison
NZ_CP116990.1	See Comparison
NZ_CP103573.1	See Comparison
NZ_OW968129.1	See Comparison
NZ_CP042590.1	See Comparison
NZ_CP019003.1	See Comparison
NZ_CP055094.1	See Comparison
NZ_CP042340.1	See Comparison
NZ_CP116997.1	See Comparison
NZ_CP115372.1	See Comparison
NZ_CP103517.1	See Comparison
CP056789.1	See Comparison
NZ_CP116990.1	See Comparison
NZ_CP103573.1	See Comparison
NZ_OW968129.1	See Comparison
NZ_CP019003.1	See Comparison
NZ_CP115372.1	See Comparison
NZ_CP116990.1	See Comparison
NZ_CP103517.1	See Comparison
NZ_CP055094.1	See Comparison
NZ_CP042590.1	See Comparison
NZ_CP042340.1	See Comparison
NZ_CP116997.1	See Comparison
CP056789.1	See Comparison
NZ_CP103573.1	See Comparison
NZ_CP055094.1	See Comparison
NZ_OW968129.1	See Comparison
NZ_CP115372.1	See Comparison
NZ_CP042340.1	See Comparison
NZ_CP019003.1	See Comparison
NZ_CP042590.1	See Comparison
NZ_CP116997.1	See Comparison
NZ_CP103573.1	See Comparison
CP056789.1	See Comparison
NZ_CP116990.1	See Comparison
NZ_CP103517.1	See Comparison
NZ_CP019003.1	See Comparison
NZ_CP055094.1	See Comparison
NZ_OW968129.1	See Comparison
NZ_CP042590.1	See Comparison
NZ_CP042340.1	See Comparison
CP056789.1	See Comparison
NZ_CP116997.1	See Comparison
NZ_CP115372.1	See Comparison
NZ_CP019003.1	See Comparison
NZ_CP103573.1	See Comparison
NZ_CP116990.1	See Comparison
NZ_CP103517.1	See Comparison
NZ_OW968129.1	See Comparison
NZ_CP055094.1	See Comparison
NZ_CP042590.1	See Comparison
NZ_CP042340.1	See Comparison
NZ_CP116997.1	See Comparison
NZ_CP115372.1	See Comparison
CP056789.1	See Comparison
NZ_CP116990.1	See Comparison
NZ_CP055094.1	See Comparison
NZ_CP103517.1	See Comparison
NZ_CP103573.1	See Comparison
NZ_OW968129.1	See Comparison
NZ_CP115372.1	See Comparison
NZ_CP019003.1	See Comparison
NZ_CP042590.1	See Comparison
NZ_CP042340.1	See Comparison
NZ_CP116997.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP042590.1

Sequence

Accession: NZ_CP042590.1
Description: Escherichia coli strain PK6 plasmid pRHEcCUB-2, complete sequence
Source: refseq
Created at NCBI: Oct. 7, 2019

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 12512712

GEOGRAPHICAL INFORMATION

Original Query: Cuba,Matanzas
Original Query Type: name
Address: Cuba,Matanzas
Coordinates (Lat/Lon): 23.05/-81.58

ECOSYSTEM

Original Query: Sus scrofa domesticus,whole organism,Healthy pig from farm
Classification: host_associated
Host-associated Taxon:
- Sus scrofa (9825)

Visualization

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

Search:

Source	Element Name	Display	Sequence	Favorite

PGAG	glycosyltransferase family 2 protein		copy
PGAG	IS1 family transposase		copy
PGAG	lipopolysaccharide biosynthesis protein		copy
PGAG	nadS		copy
PGAG	type II toxin-antitoxin system RelE/ParE family toxin		copy
PGAG	MbeD family mobilization/exclusion protein		copy
PGAG	hypothetical protein		copy
PGAG	replication initiation protein		copy
PGAG	lipoprotein		copy
PGAG	hypothetical protein		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 15 entries

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	LT985313_00005	rep_cluster_2373	7559	7925	minus	96.185	89	2.91e-169	601
replicon	EF088686_00008	rep_cluster_2335	9569	10078	minus	94.51	99	0	785
oriT	CP008720	MOBP	10044	10218	plus	97.143	100	5.58e-78	296
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 3 of 3 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2