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v. 2024_05_31_v2
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Typing
Plasmid NZ_OW967980.1
Sequence
Nucleotide Information
Accession
NZ_OW967980.1
Description
Escherichia coli isolate 10 plasmid P5, complete sequence
Source
refseq
Topology
circular
Length
12602 bp
GC Content
0.46 %
Created at NCBI
May 20, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_905330215.2
Assembly Coverage
243
Biosample
Curated Collection Information
Accession
22316788
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Spain
Original Query Type
name
Coordinates (Lat/Lon)
39.33/-4.84
Address
Spain
ECOSYSTEM
Original Query
Homo sapiens,Hospital Universitario Mutua de Terrassa (Terrassa)
Classification
anthropogenic,hospital,host_associated,location
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
diseased
DOID/SYMP
Disease
(
DOID:4
)
A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
Visualization
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Plasmids from same Biosample
NZ_OW967982.1
NZ_OW967981.1
NZ_OW967979.1
NZ_OW967978.1
NZ_OW967977.1
NZ_OW967976.1
Similar Plasmids
based on Mash distance
NZ_CP042590.1
See Comparison
NZ_CP042340.1
See Comparison
NZ_CP115372.1
See Comparison
NZ_CP116997.1
See Comparison
CP056789.1
See Comparison
NZ_CP019003.1
See Comparison
NZ_CP116990.1
See Comparison
NZ_CP103573.1
See Comparison
NZ_OW968129.1
See Comparison
NZ_CP055094.1
See Comparison
NZ_CP103517.1
See Comparison
NZ_OW967980.1
See Comparison
NZ_CP116997.1
See Comparison
NZ_CP042590.1
See Comparison
NZ_CP042340.1
See Comparison
NZ_CP115372.1
See Comparison
CP056789.1
See Comparison
NZ_CP103573.1
See Comparison
NZ_CP116990.1
See Comparison
NZ_CP019003.1
See Comparison
NZ_CP103517.1
See Comparison
NZ_OW968129.1
See Comparison
NZ_CP055094.1
See Comparison
NZ_CP115372.1
See Comparison
NZ_CP042590.1
See Comparison
NZ_CP042340.1
See Comparison
NZ_CP116997.1
See Comparison
CP056789.1
See Comparison
NZ_CP116990.1
See Comparison
NZ_CP103517.1
See Comparison
NZ_CP103573.1
See Comparison
NZ_OW968129.1
See Comparison
NZ_CP019003.1
See Comparison
NZ_CP055094.1
See Comparison
NZ_CP055094.1
See Comparison
NZ_CP042590.1
See Comparison
NZ_CP042340.1
See Comparison
NZ_CP115372.1
See Comparison
NZ_CP116997.1
See Comparison
CP056789.1
See Comparison
NZ_CP116990.1
See Comparison
NZ_CP103517.1
See Comparison
NZ_CP103573.1
See Comparison
NZ_OW968129.1
See Comparison
NZ_CP042340.1
See Comparison
NZ_CP019003.1
See Comparison
NZ_CP115372.1
See Comparison
NZ_CP042590.1
See Comparison
NZ_CP055094.1
See Comparison
NZ_CP116997.1
See Comparison
CP056789.1
See Comparison
NZ_CP116990.1
See Comparison
NZ_CP103517.1
See Comparison
NZ_CP103573.1
See Comparison
NZ_OW968129.1
See Comparison
NZ_CP042340.1
See Comparison
NZ_CP019003.1
See Comparison
NZ_CP042590.1
See Comparison
NZ_CP115372.1
See Comparison
CP056789.1
See Comparison
NZ_CP116997.1
See Comparison
NZ_OW968129.1
See Comparison
NZ_CP116990.1
See Comparison
NZ_CP103517.1
See Comparison
NZ_CP103573.1
See Comparison
NZ_CP055094.1
See Comparison
NZ_CP019003.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP042590.1
Sequence
Accession
:
NZ_CP042590.1
Description
: Escherichia coli strain PK6 plasmid pRHEcCUB-2, complete sequence
Source
: refseq
Created at NCBI
: Oct. 7, 2019
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
12512712
GEOGRAPHICAL INFORMATION
Original Query
: Cuba,Matanzas
Original Query Type
: name
Address
: Cuba,Matanzas
Coordinates
(Lat/Lon): 23.05/-81.58
ECOSYSTEM
Original Query
: Sus scrofa domesticus,whole organism,Healthy pig from farm
Classification
: host_associated
Host-associated Taxon
:
Sus scrofa (
9825
)
Visualization
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JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore