Plasmid NZ_CP042340.1

Sequence

Nucleotide Information

Accession NZ_CP042340.1
Description Escherichia coli strain GZ04-0086 plasmid p13k-GZ04, complete sequence
Source refseq
Topology circular
Length 12602 bp
GC Content 0.46 %
Created at NCBI Aug. 5, 2019



Assembly

Genome Data Information

Accession GCF_004405205.2
Assembly Coverage 124


Biosample

Curated Collection Information
Accession 11174938

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 23.12N;113.28E
Original Query Type coordinates
Coordinates (Lat/Lon) 23.12/113.28
Address Dashatou 2nd Road, Dashatou, Baiyun, Yuexiu District, Guangzhou City, Guangdong Province, 510100, China

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP019003.1 See Comparison
NZ_CP042590.1 See Comparison
NZ_CP115372.1 See Comparison
CP056789.1 See Comparison
NZ_CP116997.1 See Comparison
NZ_OW968129.1 See Comparison
NZ_CP116990.1 See Comparison
NZ_CP103573.1 See Comparison
NZ_CP103517.1 See Comparison
NZ_OW967980.1 See Comparison
NZ_CP019003.1 See Comparison
NZ_CP055094.1 See Comparison
NZ_CP103573.1 See Comparison
NZ_CP115372.1 See Comparison
NZ_CP103517.1 See Comparison
NZ_CP042590.1 See Comparison
NZ_CP116997.1 See Comparison
CP056789.1 See Comparison
NZ_CP116990.1 See Comparison
NZ_OW967980.1 See Comparison
NZ_CP115372.1 See Comparison
NZ_CP019003.1 See Comparison
NZ_OW968129.1 See Comparison
NZ_CP055094.1 See Comparison
NZ_CP042590.1 See Comparison
NZ_CP116997.1 See Comparison
NZ_CP116990.1 See Comparison
CP056789.1 See Comparison
NZ_CP055094.1 See Comparison
NZ_CP103517.1 See Comparison
NZ_OW967980.1 See Comparison
NZ_CP103573.1 See Comparison
NZ_OW968129.1 See Comparison
NZ_CP042590.1 See Comparison
NZ_CP019003.1 See Comparison
NZ_CP115372.1 See Comparison
NZ_CP042340.1 See Comparison
NZ_CP116990.1 See Comparison
NZ_CP116997.1 See Comparison
CP056789.1 See Comparison
NZ_OW968129.1 See Comparison
NZ_CP103517.1 See Comparison
NZ_OW967980.1 See Comparison
NZ_CP103573.1 See Comparison
NZ_CP055094.1 See Comparison
CP056789.1 See Comparison
NZ_CP042590.1 See Comparison
NZ_CP115372.1 See Comparison
NZ_CP019003.1 See Comparison
NZ_CP116997.1 See Comparison
NZ_OW968129.1 See Comparison
NZ_CP103573.1 See Comparison
NZ_OW967980.1 See Comparison
NZ_CP116990.1 See Comparison
NZ_CP103517.1 See Comparison
NZ_CP019003.1 See Comparison
NZ_CP055094.1 See Comparison
NZ_CP115372.1 See Comparison
CP056789.1 See Comparison
NZ_CP116990.1 See Comparison
NZ_CP103517.1 See Comparison
NZ_CP103573.1 See Comparison
NZ_CP042590.1 See Comparison
NZ_CP116997.1 See Comparison
NZ_OW967980.1 See Comparison
NZ_OW968129.1 See Comparison
NZ_CP055094.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore