Plasmid NZ_OW967977.1

Sequence

Nucleotide Information

Accession NZ_OW967977.1
Description Escherichia coli isolate 10 plasmid P2, complete sequence
Source refseq
Topology circular
Length 103714 bp
GC Content 0.50 %
Created at NCBI May 20, 2022



Assembly

Genome Data Information

Accession GCF_905330215.2
Assembly Coverage 243


Biosample

Curated Collection Information
Accession 22316788

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Hospital Universitario Mutua de Terrassa (Terrassa)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaCTX-M-14copy
PGAGrepAcopy
PGAGhypothetical proteincopy
PGAGDUF6685 family proteincopy
PGAGProQ/FINO family proteincopy
PGAGAAA family ATPasecopy
PGAGTn3 family transposasecopy
PGAGrecombinase family proteincopy
PGAGATP-binding cassette domain-containing proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 123 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_019097MOBP4710449797plus94.3219901667
mate-pair-formationNC_019097_00056MPF_I4987052131minus98.8069201446
mate-pair-formationNC_022267_00057MPF_I6179662995minus981000757
mate-pair-formationNC_011419_00085MPF_I6777368150minus99.206945.42e-48171
mate-pair-formationNC_023290_00086MPF_I6820468728minus99.4291003.4400000000000003e-100322
mate-pair-formationNC_015965_00072MPF_I6873169432minus99.5731004.56e-153477
mate-pair-formationNC_019097_00075MPF_I7072771707minus99.3881000654
mate-pair-formationNC_022267_00069MPF_I7176372410minus99.074915.71e-143448
mate-pair-formationNZ_CM001473_00069MPF_I7241072754minus91.3791001.6799999999999995e-54189
mate-pair-formationNC_019097_00085MPF_I7863079445minus1001004.32e-178550
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2