Plasmid NZ_OU015953.1

Sequence

Nucleotide Information

Accession	NZ_OU015953.1
Description	Enterococcus faecium isolate USZ_VRE5_P5 plasmid pl7, complete sequence
Source	refseq
Topology	circular
Length	2947 bp
GC Content	0.35 %
Created at NCBI	May 12, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Enterococcus faecium (1352)

Lineage

Superkingdom	Bacteria (2)
Phylum	Bacillota (1239)
Class	Bacilli (91061)
Order	Lactobacillales (186826)
Family	Enterococcaceae (81852)
Genus	Enterococcus (1350)
Species	Enterococcus_faecium (1352)
Strain

Assembly

Genome Data Information

Accession	GCF_907176135.1
Assembly Coverage	18

Biosample

Curated Collection Information

Accession	19039084

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	47.4N;8.5E
Original Query Type	coordinates
Coordinates (Lat/Lon)	47.40/8.50
Address	25b, Bauherrenstrasse, Höngg, Kreis 10, Zurich, District Zurich, Zurich, 8049, Switzerland

ECOSYSTEM

Original Query	Homo sapiens,Superficial wound
Classification	host_associated,wound
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	diseased
DOID/SYMP	Disease (DOID:4 ) A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

AP026599.1	See Comparison
NZ_LR135252.1	See Comparison
NZ_CP083927.1	See Comparison
NZ_CP083917.1	See Comparison
NZ_OU016044.1	See Comparison
NZ_OU016034.1	See Comparison
NZ_LR135242.1	See Comparison
NZ_LR135233.1	See Comparison
NZ_LR135407.1	See Comparison
NZ_LR135400.1	See Comparison
NZ_LR135418.1	See Comparison
NZ_LR135413.1	See Comparison
AP026599.1	See Comparison
NZ_CP131840.1	See Comparison
NZ_CP131855.1	See Comparison
NZ_CP131808.1	See Comparison
NZ_LR135426.1	See Comparison
NZ_CP083927.1	See Comparison
NZ_LR135252.1	See Comparison
NZ_LR135242.1	See Comparison
NZ_LR135233.1	See Comparison
NZ_LR135407.1	See Comparison
NZ_LR135400.1	See Comparison
NZ_LR135418.1	See Comparison
NZ_LR135413.1	See Comparison
NZ_LR135426.1	See Comparison
NZ_CP131840.1	See Comparison
NZ_CP131855.1	See Comparison
NZ_CP131808.1	See Comparison
AP026599.1	See Comparison
NZ_CP083927.1	See Comparison
NZ_CP083917.1	See Comparison
NZ_OU016044.1	See Comparison
NZ_OU016034.1	See Comparison
NZ_CP083917.1	See Comparison
NZ_OU016044.1	See Comparison
NZ_OU016034.1	See Comparison
NZ_LR135426.1	See Comparison
NZ_LR135252.1	See Comparison
NZ_LR135242.1	See Comparison
NZ_LR135233.1	See Comparison
NZ_LR135407.1	See Comparison
NZ_LR135400.1	See Comparison
NZ_LR135418.1	See Comparison
NZ_LR135413.1	See Comparison
NZ_CP083927.1	See Comparison
NZ_CP131840.1	See Comparison
NZ_CP131855.1	See Comparison
NZ_CP131808.1	See Comparison
AP026599.1	See Comparison
NZ_CP083917.1	See Comparison
NZ_OU016034.1	See Comparison
NZ_LR135252.1	See Comparison
NZ_OU016044.1	See Comparison
NZ_LR135242.1	See Comparison
NZ_LR135233.1	See Comparison
NZ_LR135407.1	See Comparison
NZ_LR135400.1	See Comparison
NZ_LR135418.1	See Comparison
NZ_LR135413.1	See Comparison
NZ_CP083927.1	See Comparison
NZ_CP131840.1	See Comparison
NZ_CP131855.1	See Comparison
NZ_CP131808.1	See Comparison
NZ_LR135426.1	See Comparison
AP026599.1	See Comparison
NZ_CP083917.1	See Comparison
NZ_LR135252.1	See Comparison
NZ_OU016044.1	See Comparison
NZ_OU016034.1	See Comparison
NZ_LR135233.1	See Comparison
NZ_LR135407.1	See Comparison
NZ_LR135400.1	See Comparison
NZ_LR135418.1	See Comparison
NZ_LR135242.1	See Comparison
NZ_LR135413.1	See Comparison
NZ_CP083927.1	See Comparison
NZ_CP131840.1	See Comparison
NZ_CP131855.1	See Comparison
NZ_CP131808.1	See Comparison
AP026599.1	See Comparison
NZ_LR135426.1	See Comparison
NZ_CP083917.1	See Comparison
NZ_OU015953.1	See Comparison
NZ_OU016044.1	See Comparison
NZ_OU016034.1	See Comparison
AP026599.1	See Comparison
NZ_LR135252.1	See Comparison
NZ_LR135242.1	See Comparison
NZ_LR135233.1	See Comparison
NZ_LR135407.1	See Comparison
NZ_LR135400.1	See Comparison
NZ_LR135418.1	See Comparison
NZ_LR135413.1	See Comparison
NZ_LR135426.1	See Comparison
NZ_CP131840.1	See Comparison
NZ_CP131855.1	See Comparison
NZ_CP131808.1	See Comparison
NZ_LR135413.1	See Comparison
NZ_CP083927.1	See Comparison
NZ_CP083917.1	See Comparison
NZ_OU016044.1	See Comparison
NZ_OU016034.1	See Comparison
NZ_LR135252.1	See Comparison
NZ_LR135242.1	See Comparison
NZ_LR135233.1	See Comparison
NZ_LR135407.1	See Comparison
NZ_LR135400.1	See Comparison
NZ_CP131840.1	See Comparison
NZ_LR135418.1	See Comparison
NZ_LR135426.1	See Comparison
NZ_CP131855.1	See Comparison
NZ_CP131808.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2