Plasmid NZ_CP131808.1

Sequence

Nucleotide Information

Accession NZ_CP131808.1
Description Enterococcus faecium strain 2016N21-233 plasmid p2016N21-233-7, complete sequence
Source refseq
Topology circular
Length 2947 bp
GC Content 0.35 %
Created at NCBI April 25, 2024



Assembly

Genome Data Information

Accession GCF_038437885.1
Assembly Coverage 80


Biosample

Curated Collection Information
Accession 36766204

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Taiwan
Original Query Type name
Coordinates (Lat/Lon) 23.60/120.84
Address Taiwan

ECOSYSTEM
Original Query Homo sapiens,culture,blood
Classification blood,cell_culture,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_LR135252.1 See Comparison
NZ_LR135242.1 See Comparison
NZ_LR135233.1 See Comparison
NZ_LR135407.1 See Comparison
NZ_LR135400.1 See Comparison
NZ_LR135418.1 See Comparison
NZ_LR135413.1 See Comparison
NZ_LR135426.1 See Comparison
NZ_CP131840.1 See Comparison
NZ_CP131855.1 See Comparison
NZ_LR135252.1 See Comparison
AP026599.1 See Comparison
NZ_CP083927.1 See Comparison
NZ_CP083917.1 See Comparison
NZ_OU015953.1 See Comparison
NZ_OU016044.1 See Comparison
NZ_OU016034.1 See Comparison
NZ_LR135242.1 See Comparison
NZ_LR135233.1 See Comparison
NZ_LR135407.1 See Comparison
NZ_LR135400.1 See Comparison
NZ_LR135418.1 See Comparison
NZ_LR135413.1 See Comparison
NZ_LR135426.1 See Comparison
NZ_LR135426.1 See Comparison
NZ_CP131840.1 See Comparison
NZ_CP131855.1 See Comparison
AP026599.1 See Comparison
NZ_CP083927.1 See Comparison
NZ_CP083917.1 See Comparison
NZ_OU015953.1 See Comparison
NZ_OU016044.1 See Comparison
NZ_OU016034.1 See Comparison
NZ_LR135252.1 See Comparison
NZ_LR135242.1 See Comparison
NZ_LR135233.1 See Comparison
NZ_LR135407.1 See Comparison
NZ_LR135400.1 See Comparison
NZ_LR135418.1 See Comparison
NZ_LR135413.1 See Comparison
AP026599.1 See Comparison
NZ_CP131840.1 See Comparison
NZ_CP131855.1 See Comparison
NZ_CP083927.1 See Comparison
NZ_CP083917.1 See Comparison
NZ_OU016034.1 See Comparison
AP026599.1 See Comparison
NZ_OU015953.1 See Comparison
NZ_OU016044.1 See Comparison
NZ_LR135252.1 See Comparison
NZ_LR135242.1 See Comparison
NZ_LR135233.1 See Comparison
NZ_LR135407.1 See Comparison
NZ_LR135400.1 See Comparison
NZ_LR135418.1 See Comparison
NZ_LR135413.1 See Comparison
NZ_LR135426.1 See Comparison
NZ_CP131840.1 See Comparison
NZ_CP131855.1 See Comparison
NZ_CP131808.1 See Comparison
NZ_OU015953.1 See Comparison
NZ_CP083927.1 See Comparison
NZ_CP083917.1 See Comparison
NZ_OU016044.1 See Comparison
NZ_OU016034.1 See Comparison
NZ_LR135426.1 See Comparison
NZ_LR135252.1 See Comparison
NZ_LR135242.1 See Comparison
NZ_LR135233.1 See Comparison
NZ_LR135407.1 See Comparison
NZ_LR135400.1 See Comparison
NZ_LR135418.1 See Comparison
NZ_LR135413.1 See Comparison
NZ_CP131840.1 See Comparison
NZ_CP131855.1 See Comparison
AP026599.1 See Comparison
NZ_LR135252.1 See Comparison
NZ_CP083927.1 See Comparison
NZ_CP083917.1 See Comparison
NZ_OU015953.1 See Comparison
NZ_OU016044.1 See Comparison
NZ_OU016034.1 See Comparison
NZ_LR135242.1 See Comparison
NZ_LR135233.1 See Comparison
NZ_LR135413.1 See Comparison
NZ_LR135407.1 See Comparison
NZ_LR135400.1 See Comparison
NZ_LR135418.1 See Comparison
NZ_LR135426.1 See Comparison
NZ_CP131840.1 See Comparison
NZ_CP131855.1 See Comparison
NZ_CP083927.1 See Comparison
AP026599.1 See Comparison
NZ_CP083917.1 See Comparison
NZ_OU015953.1 See Comparison
NZ_OU016044.1 See Comparison
NZ_OU016034.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore