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v. 2024_05_31_v2
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Typing
Plasmid NZ_OU015714.1
Sequence
Nucleotide Information
Accession
NZ_OU015714.1
Description
Enterococcus faecium isolate USZ_VRE32_P32 plasmid pl5, complete sequence
Source
refseq
Topology
circular
Length
3304 bp
GC Content
0.34 %
Created at NCBI
May 10, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Enterococcus faecium (1352)
Lineage
Superkingdom
Bacteria (2)
Phylum
Bacillota (1239)
Class
Bacilli (91061)
Order
Lactobacillales (186826)
Family
Enterococcaceae (81852)
Genus
Enterococcus (1350)
Species
Enterococcus_faecium (1352)
Strain
Assembly
Genome Data Information
Accession
GCF_907165365.1
Assembly Coverage
26
Biosample
Curated Collection Information
Accession
19039078
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
47.4N;8.5E
Original Query Type
coordinates
Coordinates (Lat/Lon)
47.40/8.50
Address
25b, Bauherrenstrasse, Höngg, Kreis 10, Zurich, District Zurich, Zurich, 8049, Switzerland
ECOSYSTEM
Original Query
Homo sapiens,Inguinal/Rectal swab
Classification
gastrointestinal_system,host_associated,rectal
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
diseased
DOID/SYMP
Disease
(
DOID:4
)
A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
Visualization
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Plasmids from same Biosample
NZ_OU015716.1
NZ_OU015715.1
NZ_OU015713.1
NZ_OU015712.1
NZ_OU015711.1
NZ_OU015710.1
NZ_OU015709.1
Similar Plasmids
based on Mash distance
NZ_OU015714.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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Sequence
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore