Plasmid NZ_OQ029480.1
Sequence
Nucleotide Information
| Accession | NZ_OQ029480.1 |
|---|---|
| Description | Escherichia coli strain f82 plasmid pf82-65, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 255382 bp |
| GC Content | 0.47 % |
| Created at NCBI | April 11, 2024 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | terZ | copy | ||
| amrfinderplus | terD | copy | ||
| amrfinderplus | tet(A) | copy | ||
| amrfinderplus | terW | copy | ||
| amrfinderplus | sul3 | copy | ||
| amrfinderplus | aph(6)-Id | copy | ||
| amrfinderplus | aph(3')-Ia | copy | ||
| amrfinderplus | blaCTX-M-65 | copy | ||
| amrfinderplus | aadA1 | copy | ||
| amrfinderplus | aadA1 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 282 entries
…
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_012555_00231 | MOBH | 189897 | 193040 | plus | 99.141 | 100 | 0 | 2122 |
| replicon | BX664015 | IncHI2A | 211 | 840 | plus | 99.524 | 100 | 0 | 1147 |
| oriT | NC_015864 | MOBH | 186002 | 186594 | plus | 100 | 100 | 0 | 1096 |
| mate-pair-formation | NC_005211_00005 | MPF_F | 2758 | 3543 | plus | 100 | 100 | 2.33e-172 | 533 |
| mate-pair-formation | NC_009838_00006 | MPF_F | 3546 | 4814 | plus | 100 | 100 | 0 | 803 |
| mate-pair-formation | NC_005211_00012 | MPF_T | 8955 | 11633 | plus | 100 | 100 | 0 | 1873 |
| mate-pair-formation | NC_021845_00017 | MPF_F | 29555 | 31063 | plus | 98.807 | 100 | 0 | 989 |
| mate-pair-formation | NC_005211_00030 | MPF_F | 31205 | 32260 | plus | 99.716 | 99 | 0 | 734 |
| mate-pair-formation | NC_005211_00200 | MPF_F | 183553 | 184965 | minus | 100 | 100 | 0 | 933 |
| mate-pair-formation | NC_005211_00207 | MPF_F | 193043 | 195124 | plus | 99.712 | 100 | 0 | 1418 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 11 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |