Plasmid NZ_CP061127.1

Sequence

Nucleotide Information

Accession NZ_CP061127.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain S304 plasmid pS304_1, complete sequence
Source refseq
Topology circular
Length 254873 bp
GC Content 0.47 %
Created at NCBI Dec. 1, 2020



Assembly

Genome Data Information

Accession GCF_015697825.1
Assembly Coverage 300


Biosample

Curated Collection Information
Accession 15962523

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.2N;120.2E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.20/120.20
Address 滨和路, 江汉社区, Changhe, Binjiang District, Zhejiang, 310052, China

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Acute enteritis
DOID/SYMP
  • Intestinal disease (DOID:5295 )
    • A gastrointestinal system disease that is located_in the intestine.
  • Acute enteritis (SYMP:0000676 )
    • Acute enteritis is a enteritis with either or both a rapid onset and a short course which is usually due to bacteria or virus.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MT513102.1 See Comparison
NZ_OQ029477.1 See Comparison
NZ_CP033636.1 See Comparison
NZ_CP128610.1 See Comparison
NZ_OQ029480.1 See Comparison
NZ_OQ029479.1 See Comparison
NZ_OP970992.1 See Comparison
NZ_CP128610.1 See Comparison
NZ_CP033636.1 See Comparison
NZ_CP142404.1 See Comparison
NZ_MT513102.1 See Comparison
NZ_MT513102.1 See Comparison
NZ_OQ029477.1 See Comparison
NZ_OQ029480.1 See Comparison
NZ_OQ029479.1 See Comparison
NZ_OP970992.1 See Comparison
NZ_CP142404.1 See Comparison
NZ_CP142404.1 See Comparison
NZ_CP033636.1 See Comparison
NZ_CP128610.1 See Comparison
NZ_OQ029477.1 See Comparison
NZ_OQ029480.1 See Comparison
NZ_OQ029479.1 See Comparison
NZ_OP970992.1 See Comparison
NZ_CP061127.1 See Comparison
NZ_CP128610.1 See Comparison
NZ_MT513102.1 See Comparison
NZ_CP033636.1 See Comparison
NZ_MT513102.1 See Comparison
NZ_CP033636.1 See Comparison
NZ_CP128610.1 See Comparison
NZ_OQ029477.1 See Comparison
NZ_OQ029480.1 See Comparison
NZ_OQ029479.1 See Comparison
NZ_OP970992.1 See Comparison
NZ_CP142404.1 See Comparison
NZ_CP033636.1 See Comparison
NZ_OQ029477.1 See Comparison
NZ_OQ029480.1 See Comparison
NZ_OQ029479.1 See Comparison
NZ_OP970992.1 See Comparison
NZ_CP142404.1 See Comparison
NZ_MT513102.1 See Comparison
NZ_OQ029477.1 See Comparison
NZ_CP128610.1 See Comparison
NZ_OQ029480.1 See Comparison
NZ_OQ029479.1 See Comparison
NZ_OP970992.1 See Comparison
NZ_CP142404.1 See Comparison
NZ_CP033636.1 See Comparison
NZ_MT513102.1 See Comparison
NZ_CP128610.1 See Comparison
NZ_OQ029477.1 See Comparison
NZ_OQ029480.1 See Comparison
NZ_OQ029479.1 See Comparison
NZ_OP970992.1 See Comparison
NZ_CP142404.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2