Plasmid NZ_CP128610.1

Sequence

Nucleotide Information

Accession NZ_CP128610.1
Description Escherichia coli strain HZ13 plasmid pHZ13-NDM, complete sequence
Source refseq
Topology circular
Length 260021 bp
GC Content 0.47 %
Created at NCBI July 5, 2023



Assembly

Genome Data Information

Accession GCF_030384845.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 35889837

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Hangzhou
Original Query Type name
Coordinates (Lat/Lon) 30.25/120.21
Address China,Hangzhou

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP061127.1 See Comparison
NZ_MN915011.1 See Comparison
NZ_CP076648.1 See Comparison
NZ_CP096588.1 See Comparison
NZ_CP033636.1 See Comparison
NZ_CP096588.1 See Comparison
NZ_OQ029480.1 See Comparison
NZ_CP061127.1 See Comparison
NZ_OR497833.1 See Comparison
NZ_CP104628.1 See Comparison
NZ_MN915011.1 See Comparison
NZ_CP061127.1 See Comparison
NZ_CP076648.1 See Comparison
NZ_OR497833.1 See Comparison
NZ_CP104628.1 See Comparison
NZ_OQ029480.1 See Comparison
NZ_CP033636.1 See Comparison
NZ_OQ029480.1 See Comparison
NZ_CP096588.1 See Comparison
NZ_OR497833.1 See Comparison
NZ_CP104628.1 See Comparison
NZ_MN915011.1 See Comparison
NZ_CP076648.1 See Comparison
NZ_CP033636.1 See Comparison
NZ_MN915011.1 See Comparison
NZ_CP061127.1 See Comparison
NZ_CP076648.1 See Comparison
NZ_CP096588.1 See Comparison
NZ_OR497833.1 See Comparison
NZ_CP033636.1 See Comparison
NZ_CP104628.1 See Comparison
NZ_CP128610.1 See Comparison
NZ_MN915011.1 See Comparison
NZ_OQ029480.1 See Comparison
NZ_CP061127.1 See Comparison
NZ_OR497833.1 See Comparison
NZ_CP076648.1 See Comparison
NZ_CP033636.1 See Comparison
NZ_CP096588.1 See Comparison
NZ_CP104628.1 See Comparison
NZ_OQ029480.1 See Comparison
NZ_CP061127.1 See Comparison
NZ_CP076648.1 See Comparison
NZ_MN915011.1 See Comparison
NZ_CP096588.1 See Comparison
NZ_CP033636.1 See Comparison
NZ_OR497833.1 See Comparison
NZ_OQ029480.1 See Comparison
NZ_CP096588.1 See Comparison
NZ_CP061127.1 See Comparison
NZ_MN915011.1 See Comparison
NZ_CP104628.1 See Comparison
NZ_CP076648.1 See Comparison
NZ_CP033636.1 See Comparison
NZ_OQ029480.1 See Comparison
NZ_OR497833.1 See Comparison
NZ_CP104628.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiaadAcopy
rgiaadAcopy
rgiaadA2copy
rgiBrucella suis mprFcopy
rgitet(A)copy
rgiAAC(6')-Ib7copy
amrfinderplusterDcopy
rgiTEM-95copy
amrfinderplusqnrS1copy
amrfinderplusqacLcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 282 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconBX664015IncHI2A143597144226plus99.52410001147
replicon000340__KU353730rep_cluster_1088202071203033plus10010001779
relaxaseNC_012555_00231MOBH7655279695plus99.14110002122
oriTNC_015864MOBH7265773249plus10010001096
mate-pair-formationNC_005211_00200MPF_F7020871620minus1001000933
mate-pair-formationNC_005211_00207MPF_F7969881779plus99.71210001418
mate-pair-formationNC_005211_00005MPF_F147493148278plus1001002.33e-172533
mate-pair-formationNC_009838_00006MPF_F148281149549plus1001000803
mate-pair-formationNC_005211_00012MPF_T153690156368plus10010001873
mate-pair-formationNC_021845_00017MPF_F175727177235plus98.8071000989
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 11 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2