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v. 2024_05_31_v2
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Typing
Plasmid NZ_OP242287.1
Sequence
Nucleotide Information
Accession
NZ_OP242287.1
Description
Escherichia coli strain LA153 plasmid pLAO67, complete sequence
Source
refseq
Topology
circular
Length
4145 bp
GC Content
0.51 %
Created at NCBI
Feb. 13, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Biosample
Curated Collection Information
Accession
29363353
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
17.962460N;102.613180E
Original Query Type
coordinates
Coordinates (Lat/Lon)
17.96/102.61
Address
Rue Mahosot, Nongchanh, Vientiane Capital, Sisattanak District, Vientiane Prefecture, 01006, Laos
ECOSYSTEM
Original Query
Homo sapiens,stool
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_OP242286.1
NZ_OP242285.1
Similar Plasmids
based on Mash distance
NZ_CP139132.1
See Comparison
NZ_AP027950.1
See Comparison
NZ_AP027768.1
See Comparison
NZ_AP027598.1
See Comparison
NZ_AP027862.1
See Comparison
CP057174.1
See Comparison
CP057074.1
See Comparison
NZ_CP049971.1
See Comparison
NZ_CP041285.1
See Comparison
NZ_CP047463.1
See Comparison
NZ_CP047457.1
See Comparison
NZ_CP073999.1
See Comparison
NZ_CP104502.1
See Comparison
NZ_CP058783.1
See Comparison
NZ_CP097184.1
See Comparison
NZ_CP073999.1
See Comparison
NZ_AP027950.1
See Comparison
CP057174.1
See Comparison
CP057074.1
See Comparison
NZ_CP049971.1
See Comparison
NZ_CP041285.1
See Comparison
NZ_CP139132.1
See Comparison
NZ_AP027768.1
See Comparison
NZ_AP027598.1
See Comparison
NZ_AP027862.1
See Comparison
NZ_CP047463.1
See Comparison
NZ_CP047457.1
See Comparison
NZ_CP104502.1
See Comparison
CP057174.1
See Comparison
NZ_CP097184.1
See Comparison
NZ_AP027950.1
See Comparison
NZ_AP027768.1
See Comparison
NZ_AP027598.1
See Comparison
NZ_AP027862.1
See Comparison
NZ_CP058783.1
See Comparison
NZ_CP139132.1
See Comparison
CP057074.1
See Comparison
NZ_CP041285.1
See Comparison
NZ_CP049971.1
See Comparison
NZ_CP104502.1
See Comparison
NZ_CP047463.1
See Comparison
NZ_CP047457.1
See Comparison
NZ_CP058783.1
See Comparison
NZ_CP073999.1
See Comparison
NZ_CP097184.1
See Comparison
NZ_CP139132.1
See Comparison
NZ_CP049971.1
See Comparison
NZ_AP027768.1
See Comparison
NZ_AP027950.1
See Comparison
NZ_AP027598.1
See Comparison
NZ_AP027862.1
See Comparison
CP057174.1
See Comparison
CP057074.1
See Comparison
NZ_CP041285.1
See Comparison
NZ_CP097184.1
See Comparison
NZ_CP047463.1
See Comparison
NZ_CP047457.1
See Comparison
NZ_CP104502.1
See Comparison
NZ_CP073999.1
See Comparison
NZ_CP041285.1
See Comparison
NZ_CP139132.1
See Comparison
NZ_AP027950.1
See Comparison
NZ_CP058783.1
See Comparison
NZ_AP027768.1
See Comparison
NZ_AP027598.1
See Comparison
NZ_AP027862.1
See Comparison
CP057174.1
See Comparison
CP057074.1
See Comparison
NZ_CP049971.1
See Comparison
NZ_CP073999.1
See Comparison
NZ_CP047463.1
See Comparison
NZ_CP047457.1
See Comparison
NZ_OP242287.1
See Comparison
NZ_CP104502.1
See Comparison
NZ_CP058783.1
See Comparison
NZ_CP097184.1
See Comparison
NZ_AP027768.1
See Comparison
NZ_AP027950.1
See Comparison
NZ_CP139132.1
See Comparison
NZ_AP027598.1
See Comparison
NZ_AP027862.1
See Comparison
NZ_CP041285.1
See Comparison
CP057174.1
See Comparison
CP057074.1
See Comparison
NZ_CP049971.1
See Comparison
NZ_CP104502.1
See Comparison
NZ_CP047463.1
See Comparison
NZ_CP047457.1
See Comparison
NZ_CP073999.1
See Comparison
NZ_CP097184.1
See Comparison
NZ_CP058783.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore