Plasmid NZ_CP104502.1

Sequence

Nucleotide Information

Accession NZ_CP104502.1
Description Escherichia coli strain E9 plasmid p2, complete sequence
Source refseq
Topology circular
Length 4145 bp
GC Content 0.51 %
Created at NCBI Sept. 24, 2022



Assembly

Genome Data Information

Accession GCF_025369815.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 30789312

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Poultry,Broiler
Classification host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query E. coli yolk sac infection
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP097184.1 See Comparison
NZ_CP058783.1 See Comparison
NZ_CP139132.1 See Comparison
NZ_AP027768.1 See Comparison
NZ_AP027950.1 See Comparison
NZ_AP027598.1 See Comparison
NZ_AP027862.1 See Comparison
NZ_CP047463.1 See Comparison
NZ_CP049971.1 See Comparison
NZ_CP041285.1 See Comparison
CP057174.1 See Comparison
CP057074.1 See Comparison
NZ_CP047457.1 See Comparison
NZ_CP041285.1 See Comparison
NZ_CP058783.1 See Comparison
NZ_CP139132.1 See Comparison
CP057174.1 See Comparison
CP057074.1 See Comparison
NZ_OP242287.1 See Comparison
NZ_CP073999.1 See Comparison
NZ_CP097184.1 See Comparison
NZ_AP027950.1 See Comparison
NZ_AP027768.1 See Comparison
NZ_AP027598.1 See Comparison
NZ_AP027862.1 See Comparison
NZ_CP049971.1 See Comparison
NZ_OP242287.1 See Comparison
NZ_CP047463.1 See Comparison
NZ_CP047457.1 See Comparison
NZ_CP073999.1 See Comparison
NZ_CP104502.1 See Comparison
NZ_CP097184.1 See Comparison
NZ_CP139132.1 See Comparison
NZ_CP058783.1 See Comparison
NZ_AP027950.1 See Comparison
NZ_CP047463.1 See Comparison
NZ_AP027598.1 See Comparison
NZ_AP027862.1 See Comparison
NZ_AP027768.1 See Comparison
CP057174.1 See Comparison
CP057074.1 See Comparison
NZ_CP049971.1 See Comparison
NZ_CP047457.1 See Comparison
NZ_OP242287.1 See Comparison
NZ_CP041285.1 See Comparison
NZ_CP073999.1 See Comparison
NZ_AP027950.1 See Comparison
NZ_CP097184.1 See Comparison
NZ_CP058783.1 See Comparison
NZ_CP139132.1 See Comparison
CP057174.1 See Comparison
NZ_AP027768.1 See Comparison
NZ_AP027598.1 See Comparison
NZ_AP027862.1 See Comparison
CP057074.1 See Comparison
NZ_CP049971.1 See Comparison
NZ_CP041285.1 See Comparison
NZ_CP047463.1 See Comparison
NZ_CP047457.1 See Comparison
NZ_CP097184.1 See Comparison
NZ_OP242287.1 See Comparison
NZ_CP073999.1 See Comparison
NZ_AP027950.1 See Comparison
NZ_CP139132.1 See Comparison
NZ_CP058783.1 See Comparison
NZ_CP047463.1 See Comparison
NZ_AP027598.1 See Comparison
NZ_AP027862.1 See Comparison
CP057174.1 See Comparison
CP057074.1 See Comparison
NZ_AP027768.1 See Comparison
NZ_CP049971.1 See Comparison
NZ_CP041285.1 See Comparison
NZ_CP047457.1 See Comparison
NZ_CP049971.1 See Comparison
NZ_CP058783.1 See Comparison
NZ_CP139132.1 See Comparison
NZ_AP027950.1 See Comparison
CP057174.1 See Comparison
CP057074.1 See Comparison
NZ_OP242287.1 See Comparison
NZ_CP073999.1 See Comparison
NZ_CP097184.1 See Comparison
NZ_AP027768.1 See Comparison
NZ_AP027598.1 See Comparison
NZ_AP027862.1 See Comparison
NZ_CP047463.1 See Comparison
NZ_CP047457.1 See Comparison
NZ_CP041285.1 See Comparison
NZ_OP242287.1 See Comparison
NZ_CP073999.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore