Plasmid CP057174.1

Sequence

Nucleotide Information

Accession CP057174.1
Description Escherichia coli strain RHB34-C12 plasmid pRHB34-C12_2, complete sequence
Source insd
Topology circular
Length 4154 bp
GC Content 0.51 %
Created at NCBI July 28, 2020



Assembly

Genome Data Information

Accession GCA_013818475.1
Assembly Coverage 177.816


Biosample

Curated Collection Information
Accession 15148341

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled pig faecal samples collected from floor of farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_OP242287.1 See Comparison
NZ_CP104502.1 See Comparison
NZ_CP073999.1 See Comparison
NZ_CP097184.1 See Comparison
NZ_CP058783.1 See Comparison
CP057074.1 See Comparison
NZ_AP027768.1 See Comparison
NZ_AP027598.1 See Comparison
NZ_AP027862.1 See Comparison
NZ_CP139132.1 See Comparison
NZ_AP027950.1 See Comparison
NZ_CP041285.1 See Comparison
NZ_CP049971.1 See Comparison
NZ_CP058783.1 See Comparison
NZ_CP047463.1 See Comparison
NZ_CP047457.1 See Comparison
NZ_OP242287.1 See Comparison
NZ_CP104502.1 See Comparison
NZ_CP073999.1 See Comparison
NZ_CP097184.1 See Comparison
NZ_AP027950.1 See Comparison
NZ_CP139132.1 See Comparison
NZ_CP049971.1 See Comparison
NZ_AP027768.1 See Comparison
NZ_AP027598.1 See Comparison
NZ_AP027862.1 See Comparison
CP057074.1 See Comparison
NZ_OP242287.1 See Comparison
NZ_CP047463.1 See Comparison
NZ_CP047457.1 See Comparison
NZ_CP041285.1 See Comparison
NZ_CP139132.1 See Comparison
NZ_CP104502.1 See Comparison
NZ_CP073999.1 See Comparison
NZ_CP097184.1 See Comparison
NZ_CP058783.1 See Comparison
NZ_AP027768.1 See Comparison
NZ_AP027950.1 See Comparison
NZ_AP027598.1 See Comparison
NZ_AP027862.1 See Comparison
NZ_CP047463.1 See Comparison
CP057074.1 See Comparison
NZ_CP049971.1 See Comparison
NZ_CP041285.1 See Comparison
NZ_CP047457.1 See Comparison
NZ_CP047463.1 See Comparison
NZ_CP058783.1 See Comparison
CP057074.1 See Comparison
NZ_CP049971.1 See Comparison
NZ_OP242287.1 See Comparison
NZ_CP104502.1 See Comparison
NZ_CP073999.1 See Comparison
NZ_CP097184.1 See Comparison
NZ_CP139132.1 See Comparison
NZ_AP027950.1 See Comparison
NZ_AP027768.1 See Comparison
NZ_AP027598.1 See Comparison
NZ_AP027862.1 See Comparison
NZ_CP041285.1 See Comparison
NZ_CP047457.1 See Comparison
NZ_CP058783.1 See Comparison
NZ_OP242287.1 See Comparison
NZ_CP104502.1 See Comparison
NZ_CP097184.1 See Comparison
NZ_CP073999.1 See Comparison
NZ_AP027950.1 See Comparison
NZ_CP139132.1 See Comparison
NZ_OP242287.1 See Comparison
NZ_AP027768.1 See Comparison
NZ_AP027598.1 See Comparison
NZ_AP027862.1 See Comparison
CP057174.1 See Comparison
CP057074.1 See Comparison
NZ_CP041285.1 See Comparison
NZ_CP049971.1 See Comparison
NZ_CP047463.1 See Comparison
NZ_CP047457.1 See Comparison
NZ_CP097184.1 See Comparison
NZ_CP104502.1 See Comparison
NZ_CP073999.1 See Comparison
NZ_AP027598.1 See Comparison
NZ_CP139132.1 See Comparison
NZ_AP027950.1 See Comparison
NZ_CP058783.1 See Comparison
NZ_AP027862.1 See Comparison
NZ_CP047463.1 See Comparison
NZ_AP027768.1 See Comparison
CP057074.1 See Comparison
NZ_CP049971.1 See Comparison
NZ_CP041285.1 See Comparison
NZ_CP047457.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore