Plasmid NZ_OM489432.1

Sequence

Nucleotide Information

Accession NZ_OM489432.1
Description Klebsiella pneumoniae strain 0213-2021 plasmid 0213_pKPN, complete sequence
Source refseq
Topology circular
Length 153189 bp
GC Content 0.52 %
Created at NCBI June 6, 2022



Biosample

Curated Collection Information
Accession 25512401

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 41.54N;12.28E
Original Query Type coordinates
Coordinates (Lat/Lon) 41.54/12.28
Address Italy

ECOSYSTEM
Original Query Homo sapiens,respiratory tract sample
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query pneumoniae
DOID/SYMP
  • Pneumonia (DOID:552 )
    • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_OM489432.1 See Comparison
NZ_CP039955.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_MH745929.1 See Comparison
CP052270.1 See Comparison
CP052209.1 See Comparison
CP052489.1 See Comparison
NZ_CP104767.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP103561.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_MH745929.1 See Comparison
NZ_CP039955.1 See Comparison
NZ_OM489434.1 See Comparison
CP052270.1 See Comparison
CP052209.1 See Comparison
CP052489.1 See Comparison
NZ_CP104767.1 See Comparison
NZ_CP103561.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP039955.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_MH745929.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_CP104767.1 See Comparison
NZ_CP103561.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
CP052270.1 See Comparison
CP052209.1 See Comparison
CP052489.1 See Comparison
NZ_MH745929.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_CP039955.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_CP103561.1 See Comparison
CP052489.1 See Comparison
NZ_CP104767.1 See Comparison
NZ_CP103561.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
CP052270.1 See Comparison
CP052209.1 See Comparison
CP052489.1 See Comparison
CP052270.1 See Comparison
CP052209.1 See Comparison
NZ_CP039955.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_MH745929.1 See Comparison
NZ_CP104767.1 See Comparison
NZ_MH745929.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_CP039955.1 See Comparison
NZ_CP039952.1 See Comparison
CP052270.1 See Comparison
CP052209.1 See Comparison
NZ_CP104767.1 See Comparison
NZ_CP103561.1 See Comparison
CP052489.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore