Plasmid NZ_CP103561.1

Sequence

Nucleotide Information

Accession NZ_CP103561.1
Description Klebsiella pneumoniae strain 5165 plasmid pMB8251_1, complete sequence
Source refseq
Topology circular
Length 151342 bp
GC Content 0.52 %
Created at NCBI Sept. 6, 2022



Assembly

Genome Data Information

Accession GCF_024917875.1
Assembly Coverage 145


Biosample

Curated Collection Information
Accession 28174085

PLASMID INFORMATION
Genotype ST307

GEOGRAPHICAL INFORMATION
Original Query 29.7068N;95.3971W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.71/-95.40
Address University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP104767.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_OM489432.1 See Comparison
NZ_CP039955.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_MH745929.1 See Comparison
CP052270.1 See Comparison
CP052489.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP104767.1 See Comparison
NZ_CP039955.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_MH745929.1 See Comparison
CP052270.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_OM489432.1 See Comparison
CP052489.1 See Comparison
NZ_CP104767.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_OM489432.1 See Comparison
CP052270.1 See Comparison
NZ_CP039955.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_MH745929.1 See Comparison
NZ_CP039955.1 See Comparison
NZ_CP104767.1 See Comparison
CP052489.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_OM489432.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_CP103561.1 See Comparison
NZ_MH745929.1 See Comparison
CP052270.1 See Comparison
CP052489.1 See Comparison
NZ_CP104767.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_OM489432.1 See Comparison
NZ_CP039955.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_MH745929.1 See Comparison
CP052489.1 See Comparison
CP052270.1 See Comparison
NZ_CP104767.1 See Comparison
CP052270.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_OM489432.1 See Comparison
NZ_CP039955.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_MH745929.1 See Comparison
CP052489.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore