Plasmid NZ_CP039955.1

Sequence

Nucleotide Information

Accession NZ_CP039955.1
Description Klebsiella pneumoniae strain AR142_2b plasmid pMBR_CTX-M-15_AR142_2b, complete sequence
Source refseq
Topology circular
Length 156332 bp
GC Content 0.52 %
Created at NCBI July 4, 2020



Assembly

Genome Data Information

Accession GCF_013378275.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 11514676

PLASMID INFORMATION
Genotype ST307

GEOGRAPHICAL INFORMATION
Original Query Switzerland,Bern
Original Query Type name
Coordinates (Lat/Lon) 46.95/7.45
Address Switzerland,Bern

ECOSYSTEM
Original Query cat,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Felis catus (9685)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP052270.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_MH745929.1 See Comparison
CP052209.1 See Comparison
CP052270.1 See Comparison
CP052370.1 See Comparison
CP052489.1 See Comparison
NZ_CP103561.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_OM489432.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_MH745929.1 See Comparison
NZ_CP104767.1 See Comparison
CP052209.1 See Comparison
NZ_CP039952.1 See Comparison
CP052370.1 See Comparison
CP052489.1 See Comparison
NZ_CP104767.1 See Comparison
NZ_CP103561.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_OM489432.1 See Comparison
NZ_CP039955.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_OM489432.1 See Comparison
NZ_MH745929.1 See Comparison
CP052270.1 See Comparison
CP052209.1 See Comparison
CP052370.1 See Comparison
CP052489.1 See Comparison
NZ_CP104767.1 See Comparison
NZ_CP103561.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_MH745929.1 See Comparison
CP052270.1 See Comparison
CP052209.1 See Comparison
NZ_CP098162.1 See Comparison
CP052370.1 See Comparison
CP052489.1 See Comparison
NZ_CP104767.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_OM489432.1 See Comparison
NZ_CP103561.1 See Comparison
CP052270.1 See Comparison
CP052209.1 See Comparison
CP052370.1 See Comparison
CP052489.1 See Comparison
NZ_CP103561.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_MH745929.1 See Comparison
NZ_CP104767.1 See Comparison
NZ_CP103561.1 See Comparison
NZ_CP039952.1 See Comparison
NZ_MH745929.1 See Comparison
CP052270.1 See Comparison
CP052209.1 See Comparison
NZ_CP104767.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_OM489432.1 See Comparison
CP052370.1 See Comparison
CP052489.1 See Comparison
NZ_CP098162.1 See Comparison
NZ_CP098146.1 See Comparison
NZ_CP098160.1 See Comparison
NZ_CP098166.1 See Comparison
NZ_CP098168.1 See Comparison
NZ_OM489434.1 See Comparison
NZ_OM489432.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore