Plasmid NZ_MT468651.1
Sequence
Nucleotide Information
| Accession | NZ_MT468651.1 |
|---|---|
| Description | Escherichia coli strain CE1628 plasmid pCE1628_I1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 94698 bp |
| GC Content | 0.50 % |
| Created at NCBI | Sept. 30, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Similar Plasmids
based on Mash distance
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaCMY-2 | copy | ||
| PGAG | ash family protein | copy | ||
| PGAG | conjugal transfer protein TraA | copy | ||
| PGAG | transcription termination/antitermination NusG family protein | copy | ||
| PGAG | conjugal transfer protein TraC | copy | ||
| PGAG | traD | copy | ||
| PGAG | PilI type IV pilus biogenesis protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | pilL | copy | ||
| PGAG | pilM | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 122 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_019097_00085 | MPF_I | 22929 | 23744 | plus | 99.632 | 100 | 1.02e-177 | 549 |
| mate-pair-formation | NZ_CM001473_00069 | MPF_I | 29620 | 29964 | plus | 91.379 | 100 | 1.6699999999999998e-54 | 189 |
| mate-pair-formation | NC_022267_00069 | MPF_I | 29964 | 30611 | plus | 98.148 | 91 | 6.16e-142 | 445 |
| mate-pair-formation | NC_019097_00075 | MPF_I | 30667 | 31647 | plus | 99.694 | 100 | 0 | 656 |
| mate-pair-formation | NC_015965_00072 | MPF_I | 32942 | 33643 | plus | 98.718 | 100 | 6.45e-152 | 473 |
| mate-pair-formation | NC_023290_00086 | MPF_I | 33646 | 34170 | plus | 99.429 | 100 | 3.4000000000000003e-100 | 322 |
| mate-pair-formation | NC_019111_00038 | MPF_I | 34224 | 34625 | plus | 97.761 | 100 | 1.18e-51 | 181 |
| mate-pair-formation | NC_022267_00057 | MPF_I | 39379 | 40578 | plus | 99.25 | 100 | 0 | 769 |
| mate-pair-formation | NC_019097_00056 | MPF_I | 48748 | 51009 | plus | 98.806 | 92 | 0 | 1446 |
| oriT | HM021326 | MOBP | 54145 | 54237 | plus | 100 | 100 | 4.37e-41 | 172 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 12 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |