Plasmid NZ_MG844436.1

Sequence

Nucleotide Information

Accession NZ_MG844436.1
Description Escherichia coli strain EC13 plasmid pCMY-136, complete sequence
Source refseq
Topology circular
Length 90844 bp
GC Content 0.50 %
Created at NCBI June 3, 2020



Biosample

Curated Collection Information
Accession 14228345

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP023385.1 See Comparison
NZ_MN540570.1 See Comparison
NZ_LR999868.1 See Comparison
NZ_LR999869.1 See Comparison
NZ_LR898869.1 See Comparison
NZ_MT468651.1 See Comparison
OU015327.1 See Comparison
OU015327.1 See Comparison
NZ_MW651978.1 See Comparison
NZ_LR999868.1 See Comparison
NZ_LR999869.1 See Comparison
NZ_LR898869.1 See Comparison
NZ_CP009566.1 See Comparison
NZ_CP023385.1 See Comparison
NZ_MN540570.1 See Comparison
NZ_MT468651.1 See Comparison
NZ_CP023385.1 See Comparison
NZ_MW651978.1 See Comparison
NZ_CP009566.1 See Comparison
NZ_MT468651.1 See Comparison
NZ_MN540570.1 See Comparison
NZ_LR999868.1 See Comparison
NZ_LR999869.1 See Comparison
NZ_LR898869.1 See Comparison
NZ_MT468651.1 See Comparison
OU015327.1 See Comparison
NZ_MW651978.1 See Comparison
NZ_CP009566.1 See Comparison
NZ_LR999868.1 See Comparison
NZ_LR999869.1 See Comparison
NZ_LR898869.1 See Comparison
NZ_CP023385.1 See Comparison
NZ_MN540570.1 See Comparison
NZ_CP009566.1 See Comparison
OU015327.1 See Comparison
NZ_MW651978.1 See Comparison
OU015327.1 See Comparison
NZ_LR999868.1 See Comparison
NZ_LR999869.1 See Comparison
NZ_MT468651.1 See Comparison
NZ_CP023385.1 See Comparison
NZ_MN540570.1 See Comparison
NZ_MG844436.1 See Comparison
NZ_LR898869.1 See Comparison
NZ_CP009566.1 See Comparison
NZ_MW651978.1 See Comparison
NZ_CP023385.1 See Comparison
NZ_LR999868.1 See Comparison
NZ_MN540570.1 See Comparison
NZ_LR898869.1 See Comparison
NZ_MT468651.1 See Comparison
NZ_LR999869.1 See Comparison
OU015327.1 See Comparison
NZ_MW651978.1 See Comparison
NZ_CP009566.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore