Plasmid NZ_KX058576.1

Sequence

Nucleotide Information

Accession NZ_KX058576.1
Description Salmonella enterica strain SJTUF10584 plasmid pS10584, complete sequence
Source refseq
Topology circular
Length 94697 bp
GC Content 0.50 %
Created at NCBI June 3, 2020



Biosample

Curated Collection Information
Accession 14227167

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Shanghai
Original Query Type name
Coordinates (Lat/Lon) 31.23/121.49
Address China,Shanghai

ECOSYSTEM
Original Query food
Classification food
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP



Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaCMY-2copy
PGAGrepAcopy
PGAGyacAcopy
PGAGyacBcopy
PGAG3'-5' exonucleasecopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGProQ/FINO family proteincopy
PGAGyagAcopy
PGAGIS91 family transposasecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 120 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
Loading...
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconMG764547IncI-gamma/K14551486plus99.80610001895
relaxaseNC_019097MOBP4127043963plus95.2129901684
oriTHM021326MOBP4080840900minus1001004.37e-41172
mate-pair-formationNC_019097_00056MPF_I4403646297minus98.8069201446
mate-pair-formationNC_022267_00057MPF_I5446755666minus99.251000769
mate-pair-formationNC_019111_00038MPF_I6042060821minus97.7611001.18e-51181
mate-pair-formationNC_023290_00086MPF_I6087561399minus99.4291003.4000000000000003e-100322
mate-pair-formationNC_015965_00072MPF_I6140262103minus98.7181006.45e-152473
mate-pair-formationNC_019097_00075MPF_I6339864378minus99.6941000656
mate-pair-formationNC_022267_00069MPF_I6443465081minus98.148916.16e-142445
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2