Plasmid NZ_MT269837.1
Sequence
Nucleotide Information
| Accession | NZ_MT269837.1 |
|---|---|
| Description | Klebsiella pneumoniae strain BSI060 plasmid pBSI060-KPC2, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 107032 bp |
| GC Content | 0.53 % |
| Created at NCBI | April 28, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaKPC-2 | copy | ||
| amrfinderplus | merT | copy | ||
| amrfinderplus | merC | copy | ||
| PGAG | RepB family plasmid replication initiator protein | copy | ||
| PGAG | ParA family plasmid-partitioning AAA ATPase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | site-specific integrase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 141 entries
…
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000759__NC_013950_00034 | rep_cluster_1418 | 1 | 876 | plus | 100 | 100 | 0 | 1618 |
| replicon | 000210__KF623109_00045 | IncU | 25571 | 26131 | minus | 100 | 100 | 0 | 1037 |
| replicon | CP033468_00001 | rep_cluster_2183 | 41123 | 41972 | minus | 82.277 | 98 | 0 | 734 |
| replicon | KF954760 | IncFII | 41979 | 42202 | minus | 88.546 | 100 | 1.28e-70 | 272 |
| relaxase | NC_021231_00058 | MOBF | 47244 | 52502 | minus | 98.06 | 100 | 0 | 3357 |
| relaxase | CP035180_00077 | MOBF | 52514 | 53269 | minus | 91.667 | 98 | 0 | 369 |
| mate-pair-formation | NC_021502_00150 | MPF_T | 52505 | 54814 | minus | 97.273 | 100 | 0 | 1427 |
| mate-pair-formation | NC_019155_00032 | MPF_F | 57284 | 60127 | minus | 96.414 | 99 | 0 | 1758 |
| mate-pair-formation | NC_019165_00034 | MPF_F | 60130 | 61485 | minus | 96.239 | 99 | 0 | 806 |
| mate-pair-formation | NC_021654_00016 | MPF_F | 64379 | 66340 | minus | 98.777 | 98 | 0 | 1243 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 18 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |