Plasmid NZ_MN543570.1

Sequence

Nucleotide Information

Accession NZ_MN543570.1
Description Klebsiella pneumoniae strain HKU49 plasmid pHKU49_CIP, complete sequence
Source refseq
Topology circular
Length 140566 bp
GC Content 0.53 %
Created at NCBI June 4, 2020



Biosample

Curated Collection Information
Accession 14228850

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Hong Kong
Original Query Type name
Coordinates (Lat/Lon) 22.35/114.18
Address Hong Kong

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_MK773536.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP055038.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054969.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP123432.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP028717.1 See Comparison
NZ_CP138797.1 See Comparison
NZ_CP138786.1 See Comparison
NZ_CP055038.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054969.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP028717.1 See Comparison
NZ_CP138797.1 See Comparison
NZ_CP138786.1 See Comparison
NZ_CP123432.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP055038.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054969.1 See Comparison
NZ_CP028717.1 See Comparison
NZ_CP138797.1 See Comparison
NZ_CP138786.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP123432.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP055038.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054969.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP123432.1 See Comparison
NZ_MN543570.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP028717.1 See Comparison
NZ_CP138797.1 See Comparison
NZ_CP138786.1 See Comparison
NZ_CP123432.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP055038.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054969.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_CP028717.1 See Comparison
NZ_CP138797.1 See Comparison
NZ_CP138786.1 See Comparison
NZ_CP055038.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054969.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_CP028717.1 See Comparison
NZ_CP123432.1 See Comparison
NZ_CP138797.1 See Comparison
NZ_CP138786.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore