Plasmid NZ_CP055038.1

Sequence

Nucleotide Information

Accession NZ_CP055038.1
Description Shigella flexneri strain SWHEFF_60 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 140589 bp
GC Content 0.53 %
Created at NCBI Feb. 24, 2022



Assembly

Genome Data Information

Accession GCF_022354005.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 13925587

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 22.5N;114.1E
Original Query Type coordinates
Coordinates (Lat/Lon) 22.50/114.10
Address 15, Geneva South Avenue, Valais, Kwu Tung Tin Sum, Kam Tsin, North District, New Territories, Hong Kong, 518032, China

ECOSYSTEM
Original Query Shek Wu Hui WWTPs_60 WWTPs effluent
Classification wastewater,wwtp
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP028717.1 See Comparison
NZ_CP138797.1 See Comparison
NZ_CP138786.1 See Comparison
NZ_CP123432.1 See Comparison
NZ_MN543570.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_MN543570.1 See Comparison
NZ_CP123432.1 See Comparison
NZ_CP028717.1 See Comparison
NZ_CP138797.1 See Comparison
NZ_CP138786.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_MN543570.1 See Comparison
NZ_CP138797.1 See Comparison
NZ_CP138786.1 See Comparison
NZ_CP028717.1 See Comparison
NZ_CP123432.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP028717.1 See Comparison
NZ_CP055038.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_CP138797.1 See Comparison
NZ_CP138786.1 See Comparison
NZ_CP123432.1 See Comparison
NZ_MN543570.1 See Comparison
NZ_MN543570.1 See Comparison
NZ_CP123432.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_CP028717.1 See Comparison
NZ_CP138797.1 See Comparison
NZ_CP138786.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_CP028717.1 See Comparison
NZ_CP138797.1 See Comparison
NZ_CP138786.1 See Comparison
NZ_CP123432.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_MN543570.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054973.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore