Plasmid NZ_CP028717.1

Sequence

Nucleotide Information

Accession NZ_CP028717.1
Description Klebsiella pneumoniae strain SCM96 plasmid pSCM96-1, complete sequence
Source refseq
Topology circular
Length 134869 bp
GC Content 0.53 %
Created at NCBI April 25, 2018



Assembly

Genome Data Information

Accession GCF_003054385.1
Assembly Coverage 250


Biosample

Curated Collection Information
Accession 8848079

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China
Original Query Type name
Coordinates (Lat/Lon) 34.41/86.03
Address China

ECOSYSTEM
Original Query Homo sapiens,Sputum sample,Sputum sample
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MN543570.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP087665.1 See Comparison
NZ_CP055038.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054969.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_CP055038.1 See Comparison
NZ_CP152065.1 See Comparison
NZ_MN543570.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP087665.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054969.1 See Comparison
NZ_CP055038.1 See Comparison
NZ_CP152065.1 See Comparison
NZ_MN543570.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP087665.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054969.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_MN543570.1 See Comparison
NZ_CP152065.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP087665.1 See Comparison
NZ_CP055038.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054969.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_CP152065.1 See Comparison
NZ_CP087665.1 See Comparison
NZ_MN543570.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP055038.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054969.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_CP152065.1 See Comparison
NZ_MN543570.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP087665.1 See Comparison
NZ_MK773536.1 See Comparison
NZ_CP055038.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054969.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_CP152065.1 See Comparison
NZ_CP028717.1 See Comparison
NZ_CP087665.1 See Comparison
NZ_MN543570.1 See Comparison
NZ_CP058759.1 See Comparison
NZ_CP055038.1 See Comparison
NZ_CP055059.1 See Comparison
NZ_CP054969.1 See Comparison
NZ_CP054973.1 See Comparison
NZ_CP152065.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiAAC(6')-Ib-cr6copy
rgiMrxcopy
amrfinderplusqnrS1copy
amrfinderplusqacEdelta1copy
amrfinderplusmph(A)copy
amrfinderplustet(A)copy
amrfinderplussul2copy
amrfinderplussul1copy
amrfinderplusaph(6)-Idcopy
amrfinderplusblaCTX-M-3copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 185 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
Loading...
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_021502_00150MPF_T1709719406minus98.44210001444
mate-pair-formationNC_019155_00032MPF_F2187424717minus96.4149901758
mate-pair-formationNC_019165_00034MPF_F2472026075minus96.239990806
mate-pair-formationNC_021654_00016MPF_F2896930930minus98.6249801242
mate-pair-formationNC_019389_00080MPF_F3098331618minus97.171001.11e-135426
mate-pair-formationNC_022609_00081MPF_F3163432560minus95.793940606
mate-pair-formationNC_014312_00128MPF_F3305733674minus98.058982.1599999999999998e-120382
mate-pair-formationNC_021502_00131MPF_T3406636702minus96.81510001759
mate-pair-formationNC_019389_00068MPF_F3920039715minus97.674893.04e-108346
mate-pair-formationNC_023332_00154MPF_F3989841319minus99.7891000790
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 18 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2