Plasmid NZ_LT992437.1

Sequence

Nucleotide Information

Accession	NZ_LT992437.1
Description	Citrobacter freundii isolate CF121SC21 plasmid 1, complete sequence
Source	refseq
Topology	circular
Length	40186 bp
GC Content	0.58 %
Created at NCBI	March 31, 2018

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Citrobacter freundii (546)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Citrobacter (544)
Species	Citrobacter_freundii (546)
Strain

Biosample

Curated Collection Information

Accession	7253413

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Spain
Original Query Type	name
Coordinates (Lat/Lon)	39.33/-4.84
Address	Spain

ECOSYSTEM

Original Query	wastewater
Classification	wastewater
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Similar Plasmids

based on Mash distance

NZ_MH909348.1	See Comparison
NZ_AP022253.1	See Comparison
NZ_KY913901.1	See Comparison
NZ_MN539620.1	See Comparison
NZ_MN477223.1	See Comparison
NZ_OW969881.1	See Comparison
NZ_CP118700.1	See Comparison
NZ_OW849084.1	See Comparison
NZ_OW849032.1	See Comparison
NZ_OW969914.1	See Comparison
NZ_OW849381.1	See Comparison
NZ_OW848983.1	See Comparison
NZ_OW967267.1	See Comparison
OW969903.1	See Comparison
OW969864.1	See Comparison
OW970313.1	See Comparison
OW970224.1	See Comparison
OW969726.1	See Comparison
OW969860.1	See Comparison
OW969856.1	See Comparison
OW969852.1	See Comparison
OW969826.1	See Comparison
OW969816.1	See Comparison
OW969809.1	See Comparison
OW969796.1	See Comparison
OW969792.1	See Comparison
OW968457.1	See Comparison
OW969787.1	See Comparison
OW968248.1	See Comparison
OW968211.1	See Comparison
OW968195.1	See Comparison
OW849539.1	See Comparison
OW848977.1	See Comparison
NZ_CP028566.1	See Comparison
OW849136.1	See Comparison
OW849094.1	See Comparison
OW849079.1	See Comparison
NZ_CP080103.1	See Comparison
OW848999.1	See Comparison
NZ_AP019194.1	See Comparison
NZ_KY913901.1	See Comparison
NZ_CP026224.1	See Comparison
NZ_LT992437.1	See Comparison
NZ_MH909348.1	See Comparison
NZ_OW967267.1	See Comparison
NZ_OW849084.1	See Comparison
NZ_OW849032.1	See Comparison
NZ_OW969881.1	See Comparison
NZ_AP022253.1	See Comparison
NZ_MN539620.1	See Comparison
NZ_MN477223.1	See Comparison
NZ_CP118700.1	See Comparison
NZ_OW969914.1	See Comparison
NZ_OW848983.1	See Comparison
NZ_OW849381.1	See Comparison
OW969903.1	See Comparison
OW970313.1	See Comparison
OW970224.1	See Comparison
OW969864.1	See Comparison
OW969860.1	See Comparison
OW969856.1	See Comparison
OW969852.1	See Comparison
OW969826.1	See Comparison
OW969726.1	See Comparison
OW969816.1	See Comparison
OW969809.1	See Comparison
OW969796.1	See Comparison
OW969792.1	See Comparison
OW969787.1	See Comparison
OW968457.1	See Comparison
OW968211.1	See Comparison
OW968248.1	See Comparison
OW968195.1	See Comparison
OW848977.1	See Comparison
OW849539.1	See Comparison
OW849136.1	See Comparison
OW849094.1	See Comparison
OW849079.1	See Comparison
OW848999.1	See Comparison
NZ_AP019194.1	See Comparison
NZ_CP080103.1	See Comparison
NZ_MH909348.1	See Comparison
NZ_CP028566.1	See Comparison
NZ_CP026224.1	See Comparison
NZ_KY913901.1	See Comparison
NZ_OW967267.1	See Comparison
NZ_MN539620.1	See Comparison
NZ_OW969914.1	See Comparison
NZ_AP022253.1	See Comparison
NZ_MN477223.1	See Comparison
NZ_CP118700.1	See Comparison
NZ_CP080103.1	See Comparison
NZ_OW849084.1	See Comparison
NZ_OW849032.1	See Comparison
NZ_OW969881.1	See Comparison
NZ_OW849381.1	See Comparison
NZ_OW848983.1	See Comparison
OW970313.1	See Comparison
OW970224.1	See Comparison
OW969903.1	See Comparison
OW969864.1	See Comparison
OW969860.1	See Comparison
OW968248.1	See Comparison
OW968211.1	See Comparison
OW849539.1	See Comparison
OW849136.1	See Comparison
OW849094.1	See Comparison
OW849079.1	See Comparison
OW848999.1	See Comparison
OW969856.1	See Comparison
OW969852.1	See Comparison
OW969826.1	See Comparison
OW969816.1	See Comparison
OW969809.1	See Comparison
OW969796.1	See Comparison
OW969792.1	See Comparison
OW969787.1	See Comparison
OW969726.1	See Comparison
OW968457.1	See Comparison
OW968195.1	See Comparison
OW848977.1	See Comparison
NZ_CP028566.1	See Comparison
NZ_AP019194.1	See Comparison
NZ_MH909348.1	See Comparison
NZ_CP026224.1	See Comparison
NZ_CP118700.1	See Comparison
NZ_KY913901.1	See Comparison
NZ_AP022253.1	See Comparison
NZ_MN539620.1	See Comparison
NZ_MN477223.1	See Comparison
NZ_OW969914.1	See Comparison
OW968195.1	See Comparison
NZ_OW849084.1	See Comparison
NZ_OW849032.1	See Comparison
NZ_OW969881.1	See Comparison
NZ_OW849381.1	See Comparison
NZ_OW848983.1	See Comparison
OW970313.1	See Comparison
OW970224.1	See Comparison
OW969903.1	See Comparison
OW969864.1	See Comparison
OW969860.1	See Comparison
OW969856.1	See Comparison
OW969852.1	See Comparison
OW968457.1	See Comparison
NZ_OW967267.1	See Comparison
OW969826.1	See Comparison
OW969816.1	See Comparison
OW969809.1	See Comparison
OW969796.1	See Comparison
OW969792.1	See Comparison
OW969787.1	See Comparison
OW969726.1	See Comparison
OW849136.1	See Comparison
OW968248.1	See Comparison
OW968211.1	See Comparison
OW848977.1	See Comparison
OW849539.1	See Comparison
OW849094.1	See Comparison
OW849079.1	See Comparison
OW848999.1	See Comparison
NZ_AP019194.1	See Comparison
NZ_CP080103.1	See Comparison
NZ_CP026224.1	See Comparison
NZ_CP028566.1	See Comparison
NZ_CP118700.1	See Comparison
NZ_MN477223.1	See Comparison
NZ_MH909348.1	See Comparison
NZ_KY913901.1	See Comparison
NZ_AP022253.1	See Comparison
NZ_MN539620.1	See Comparison
NZ_OW967267.1	See Comparison
NZ_OW969914.1	See Comparison
OW968457.1	See Comparison
OW970313.1	See Comparison
OW970224.1	See Comparison
OW969903.1	See Comparison
OW969864.1	See Comparison
OW969860.1	See Comparison
OW969856.1	See Comparison
OW969852.1	See Comparison
NZ_OW849084.1	See Comparison
NZ_OW849032.1	See Comparison
NZ_OW969881.1	See Comparison
NZ_OW849381.1	See Comparison
NZ_OW848983.1	See Comparison
OW969826.1	See Comparison
OW969816.1	See Comparison
OW969809.1	See Comparison
OW969796.1	See Comparison
OW969792.1	See Comparison
OW969787.1	See Comparison
OW969726.1	See Comparison
OW968195.1	See Comparison
OW849136.1	See Comparison
OW968248.1	See Comparison
OW968211.1	See Comparison
OW848977.1	See Comparison
OW849539.1	See Comparison
OW849094.1	See Comparison
OW849079.1	See Comparison
OW848999.1	See Comparison
NZ_CP080103.1	See Comparison
NZ_AP019194.1	See Comparison
NZ_CP028566.1	See Comparison
NZ_KY913901.1	See Comparison
NZ_CP026224.1	See Comparison
NZ_MH909348.1	See Comparison
NZ_AP022253.1	See Comparison
NZ_MN539620.1	See Comparison
NZ_MN477223.1	See Comparison
NZ_OW849381.1	See Comparison
NZ_CP118700.1	See Comparison
OW970313.1	See Comparison
OW970224.1	See Comparison
NZ_OW849084.1	See Comparison
NZ_OW849032.1	See Comparison
NZ_OW969914.1	See Comparison
NZ_OW967267.1	See Comparison
NZ_OW969881.1	See Comparison
NZ_OW848983.1	See Comparison
OW969826.1	See Comparison
OW969903.1	See Comparison
OW969864.1	See Comparison
OW969860.1	See Comparison
OW969856.1	See Comparison
OW969852.1	See Comparison
OW969816.1	See Comparison
OW969809.1	See Comparison
OW969796.1	See Comparison
OW969792.1	See Comparison
OW969787.1	See Comparison
OW969726.1	See Comparison
OW968248.1	See Comparison
OW968457.1	See Comparison
OW968211.1	See Comparison
OW848977.1	See Comparison
OW968195.1	See Comparison
NZ_CP026224.1	See Comparison
OW849539.1	See Comparison
OW849136.1	See Comparison
NZ_AP019194.1	See Comparison
NZ_CP028566.1	See Comparison
OW849094.1	See Comparison
OW849079.1	See Comparison
OW848999.1	See Comparison
NZ_CP080103.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore