Plasmid NZ_OW848983.1

Sequence

Nucleotide Information

Accession NZ_OW848983.1
Description Escherichia coli isolate 23 plasmid P3, complete sequence
Source refseq
Topology circular
Length 39780 bp
GC Content 0.58 %
Created at NCBI May 14, 2022



Assembly

Genome Data Information

Accession GCF_905219285.2
Assembly Coverage 536


Biosample

Curated Collection Information
Accession 22316637

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Hospital Infanta Leonor (Madrid)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MN539620.1 See Comparison
NZ_OW849032.1 See Comparison
NZ_OW969881.1 See Comparison
NZ_OW849381.1 See Comparison
OW970224.1 See Comparison
OW969860.1 See Comparison
OW969792.1 See Comparison
OW969726.1 See Comparison
OW968457.1 See Comparison
OW968248.1 See Comparison
OW968211.1 See Comparison
OW968195.1 See Comparison
OW848977.1 See Comparison
OW848999.1 See Comparison
OW849539.1 See Comparison
OW849136.1 See Comparison
OW849094.1 See Comparison
NZ_OW849032.1 See Comparison
OW849079.1 See Comparison
NZ_CP080103.1 See Comparison
NZ_KY913901.1 See Comparison
NZ_MN539620.1 See Comparison
NZ_LT992437.1 See Comparison
OW969860.1 See Comparison
NZ_OW969881.1 See Comparison
NZ_OW849381.1 See Comparison
OW969726.1 See Comparison
OW970224.1 See Comparison
OW969792.1 See Comparison
OW968457.1 See Comparison
OW968248.1 See Comparison
OW968211.1 See Comparison
OW968195.1 See Comparison
OW849539.1 See Comparison
OW848977.1 See Comparison
OW849136.1 See Comparison
OW848999.1 See Comparison
OW849094.1 See Comparison
OW849079.1 See Comparison
NZ_MN539620.1 See Comparison
NZ_CP080103.1 See Comparison
NZ_LT992437.1 See Comparison
NZ_OW849032.1 See Comparison
NZ_OW969881.1 See Comparison
NZ_OW849381.1 See Comparison
OW970224.1 See Comparison
OW969860.1 See Comparison
OW969792.1 See Comparison
OW969726.1 See Comparison
OW968457.1 See Comparison
OW968248.1 See Comparison
OW968211.1 See Comparison
OW968195.1 See Comparison
OW848977.1 See Comparison
OW849539.1 See Comparison
OW849136.1 See Comparison
OW849094.1 See Comparison
OW849079.1 See Comparison
OW848999.1 See Comparison
NZ_CP080103.1 See Comparison
NZ_KY913901.1 See Comparison
NZ_MN539620.1 See Comparison
NZ_LT992437.1 See Comparison
NZ_KY913901.1 See Comparison
OW969860.1 See Comparison
NZ_OW849032.1 See Comparison
NZ_OW969881.1 See Comparison
NZ_OW849381.1 See Comparison
OW969792.1 See Comparison
OW969726.1 See Comparison
OW970224.1 See Comparison
OW968457.1 See Comparison
OW968248.1 See Comparison
OW968195.1 See Comparison
OW968211.1 See Comparison
OW848977.1 See Comparison
OW849539.1 See Comparison
OW849136.1 See Comparison
OW849094.1 See Comparison
OW849079.1 See Comparison
OW848999.1 See Comparison
NZ_CP080103.1 See Comparison
NZ_LT992437.1 See Comparison
NZ_LT992437.1 See Comparison
NZ_KY913901.1 See Comparison
NZ_OW849032.1 See Comparison
OW969792.1 See Comparison
OW969726.1 See Comparison
OW968457.1 See Comparison
OW968195.1 See Comparison
OW848977.1 See Comparison
NZ_MN539620.1 See Comparison
NZ_OW969881.1 See Comparison
NZ_OW849381.1 See Comparison
OW970224.1 See Comparison
OW969860.1 See Comparison
OW968248.1 See Comparison
OW968211.1 See Comparison
OW849539.1 See Comparison
OW849136.1 See Comparison
OW849094.1 See Comparison
OW849079.1 See Comparison
OW848999.1 See Comparison
NZ_CP080103.1 See Comparison
NZ_MN539620.1 See Comparison
NZ_KY913901.1 See Comparison
NZ_OW969881.1 See Comparison
OW970224.1 See Comparison
NZ_OW849381.1 See Comparison
NZ_OW848983.1 See Comparison
OW969860.1 See Comparison
OW969792.1 See Comparison
OW968457.1 See Comparison
OW969726.1 See Comparison
OW968248.1 See Comparison
OW968211.1 See Comparison
OW849136.1 See Comparison
OW968195.1 See Comparison
OW848977.1 See Comparison
OW849539.1 See Comparison
OW849094.1 See Comparison
OW849079.1 See Comparison
OW848999.1 See Comparison
NZ_LT992437.1 See Comparison
NZ_OW849032.1 See Comparison
NZ_CP080103.1 See Comparison
NZ_KY913901.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore