Plasmid NZ_AP022253.1
Sequence
Nucleotide Information
| Accession | NZ_AP022253.1 |
|---|---|
| Description | Aeromonas hydrophila strain WP8-S18-ESBL-02 plasmid pWP8-S18-ESBL-02_1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 39071 bp |
| GC Content | 0.58 % |
| Created at NCBI | Aug. 13, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Aeromonas hydrophila (644) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Aeromonadales (135624) |
| Family | Aeromonadaceae (84642) |
| Genus | Aeromonas (642) |
| Species | Aeromonas_hydrophila (644) |
| Strain |
Biosample
Curated Collection Information
| Accession | 15592149 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 35.6316N;139.7460E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 35.63/139.75 |
| Address | 新港南橋, Shinagawa Pier Line, Konan 3-chome, Shinagawa, Minato, Tokyo, 108-0075, Japan |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| rgi | TEM-246 | copy | ||
| amrfinderplus | blaKPC-2 | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | antirestriction protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | transcriptional regulator | copy | ||
| PGAG | carbapenem-hydrolyzing class A beta-lactamase KPC-2 | copy | ||
| PGAG | bla | copy | ||
| PGAG | IS481-like element ISKpn27 family transposase | copy | ||
| PGAG | recombinase family protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 46 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000210__KF623109_00045 | IncU | 101 | 661 | plus | 100 | 100 | 0 | 1037 |
| replicon | 000172__KU578314_00001 | IncP | 20728 | 22104 | plus | 100 | 100 | 0 | 2543 |
| relaxase | NC_003124_00014 | MOBP | 34817 | 37483 | plus | 91.789 | 99 | 0 | 1572 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |