Plasmid CP077285.1

Sequence

Nucleotide Information

Accession CP077285.1
Description Escherichia coli strain FDAARGOS_1388 plasmid unnamed4, complete sequence
Source insd
Topology circular
Length 4082 bp
GC Content 0.49 %
Created at NCBI June 28, 2021



Assembly

Genome Data Information

Accession GCA_019047905.1
Assembly Coverage 769.82


Biosample

Curated Collection Information
Accession 16357530

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,MT
Original Query Type name
Coordinates (Lat/Lon) 47.38/-109.64
Address USA,MT

ECOSYSTEM
Original Query Seth Lab strain,Seth Lab Isolate
Classification cell_culture
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OW848787.1 See Comparison
CP088758.1 See Comparison
NZ_OU342908.1 See Comparison
CP077357.1 See Comparison
CP077344.1 See Comparison
CP077253.1 See Comparison
NZ_CP135662.1 See Comparison
NZ_CP107124.1 See Comparison
CP077357.1 See Comparison
NZ_CP070029.1 See Comparison
NZ_CP041958.1 See Comparison
NZ_LR890408.1 See Comparison
NZ_OW848787.1 See Comparison
CP088758.1 See Comparison
CP077344.1 See Comparison
CP077253.1 See Comparison
NZ_CP135662.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP041958.1 See Comparison
NZ_CP070029.1 See Comparison
NZ_LR890408.1 See Comparison
CP088758.1 See Comparison
NZ_OU342908.1 See Comparison
CP077357.1 See Comparison
CP077344.1 See Comparison
CP077253.1 See Comparison
NZ_CP041958.1 See Comparison
NZ_CP135662.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_LR890408.1 See Comparison
NZ_CP070029.1 See Comparison
CP077357.1 See Comparison
CP088758.1 See Comparison
NZ_OW848787.1 See Comparison
CP077344.1 See Comparison
CP077285.1 See Comparison
NZ_OU342908.1 See Comparison
CP077253.1 See Comparison
NZ_LR890408.1 See Comparison
NZ_CP135662.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP041958.1 See Comparison
NZ_CP070029.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_OU342908.1 See Comparison
CP077357.1 See Comparison
CP077344.1 See Comparison
CP077253.1 See Comparison
CP088758.1 See Comparison
NZ_CP135662.1 See Comparison
NZ_CP070029.1 See Comparison
NZ_CP041958.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_LR890408.1 See Comparison
CP088758.1 See Comparison
NZ_OW848787.1 See Comparison
CP077357.1 See Comparison
CP077344.1 See Comparison
CP077253.1 See Comparison
NZ_CP135662.1 See Comparison
NZ_LR890408.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP041958.1 See Comparison
NZ_CP070029.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore