Plasmid NZ_LR881464.1
Sequence
Nucleotide Information
Accession | NZ_LR881464.1 |
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Description | Salmonella enterica subsp. enterica serovar Typhimurium isolate S.Tm LT2p22_assembled plasmid 2_Linear- |
Source | refseq |
Topology | linear |
Length | 93927 bp |
GC Content | 0.53 % |
Created at NCBI | Sept. 17, 2020 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Salmonella enterica (90371) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Salmonella (590) |
Species | Salmonella_enterica (28901) |
Strain |
Biosample
Curated Collection Information
Accession | 16194173 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | None |
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Original Query Type | None |
Coordinates (Lat/Lon) | |
Address | None |
ECOSYSTEM
Original Query | None |
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Classification | None |
Host-associated Taxon |
DISEASE
Original Query | None |
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DOID/SYMP |
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
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NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
replicon | 000101__NZ_CP012345_00042 | IncFIB | 56545 | 57616 | plus | 93.097 | 100 | 0 | 1568 |
replicon | 000114__CP015527 | IncFII | 71463 | 72344 | minus | 99.546 | 100 | 0 | 1607 |
relaxase | NC_007208_00043 | MOBF | 75753 | 80909 | minus | 95.695 | 98 | 0 | 3251 |
mate-pair-formation | NC_017054_00098 | MPF_F | 97 | 732 | minus | 100 | 100 | 4.3299999999999996e-138 | 433 |
mate-pair-formation | NC_017054_00096 | MPF_F | 1047 | 2036 | minus | 100 | 100 | 0 | 664 |
mate-pair-formation | NC_017054_00095 | MPF_F | 2036 | 2665 | minus | 99.524 | 100 | 1.34e-136 | 428 |
mate-pair-formation | NC_013437_00116 | MPF_T | 3026 | 5671 | minus | 99.773 | 100 | 0 | 1797 |
mate-pair-formation | NC_019112_00063 | MPF_F | 6886 | 7398 | minus | 91.813 | 100 | 3.2799999999999998e-90 | 293 |
mate-pair-formation | NC_019094_00090 | MPF_F | 8237 | 9625 | minus | 90.773 | 96 | 0 | 796 |
mate-pair-formation | NC_019002_00072 | MPF_F | 9628 | 10365 | minus | 97.561 | 100 | 1.38e-147 | 462 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 16 entries
Detected typing markers by plasmidfinder
NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
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NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |