Plasmid NZ_CP149377.1
Sequence
Nucleotide Information
| Accession | NZ_CP149377.1 |
|---|---|
| Description | Salmonella enterica subsp. enterica serovar Typhimurium strain Z1323HSL0029 plasmid pZ1323HSL0029-3, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 93844 bp |
| GC Content | 0.53 % |
| Created at NCBI | April 5, 2024 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (90371) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Biosample
Curated Collection Information
| Accession | 40439947 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | South Korea |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 36.56/127.94 |
| Address | South Korea |
ECOSYSTEM
| Original Query | Homo sapiens,single cell |
|---|---|
| Classification | cell_culture,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | spvD | copy | ||
| PGAG | RepB family plasmid replication initiator protein | copy | ||
| PGAG | pefB | copy | ||
| PGAG | pefA | copy | ||
| PGAG | pefC | copy | ||
| PGAG | pefD | copy | ||
| PGAG | membrane protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | pefI | copy | ||
| PGAG | helix-turn-helix transcriptional regulator | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 122 entries
…
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NZ_CM001063_00039 | MPF_T | 24989 | 27148 | minus | 95.765 | 100 | 0 | 1391 |
| replicon | 000101__NZ_CP012345_00042 | IncFIB | 1 | 978 | plus | 93.149 | 100 | 0 | 1435 |
| replicon | 000114__CP015527 | IncFII | 14825 | 15706 | minus | 99.546 | 100 | 0 | 1607 |
| relaxase | NC_007208_00043 | MOBF | 19114 | 24270 | minus | 95.695 | 98 | 0 | 3251 |
| mate-pair-formation | NC_003277_00107 | MPF_F | 28805 | 31624 | minus | 99.894 | 100 | 0 | 1847 |
| mate-pair-formation | NC_019112_00045 | MPF_F | 31759 | 33003 | minus | 99.277 | 99 | 0 | 803 |
| mate-pair-formation | NC_017054_00100 | MPF_F | 35025 | 36848 | minus | 99.836 | 100 | 0 | 1134 |
| mate-pair-formation | NC_017054_00098 | MPF_F | 37304 | 37939 | minus | 100 | 100 | 4.3299999999999996e-138 | 433 |
| mate-pair-formation | NC_017054_00096 | MPF_F | 38254 | 39243 | minus | 100 | 100 | 0 | 664 |
| mate-pair-formation | NC_017054_00095 | MPF_F | 39243 | 39872 | minus | 99.524 | 100 | 1.34e-136 | 428 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 16 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |