Plasmid NZ_CP084195.1
Sequence
Nucleotide Information
| Accession | NZ_CP084195.1 |
|---|---|
| Description | Salmonella sp. A39 plasmid unnamed1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 93861 bp |
| GC Content | 0.53 % |
| Created at NCBI | Oct. 7, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella sp. A39 (2878546) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_sp._A39 (2878546) |
| Strain |
Biosample
Curated Collection Information
| Accession | 21849513 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China,jiangxi |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 28.00/116.00 |
| Address | China,jiangxi |
ECOSYSTEM
| Original Query | cell culture,chicken |
|---|---|
| Classification | cell_culture,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | spvD | copy | ||
| PGAG | Y-family DNA polymerase | copy | ||
| PGAG | ParB family protein | copy | ||
| PGAG | AAA family ATPase | copy | ||
| PGAG | Rpn family recombination-promoting nuclease/putative transposase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | DNA-binding protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | carbonic anhydrase | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 120 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_007208_00043 | MOBF | 48778 | 53934 | minus | 95.695 | 98 | 0 | 3251 |
| mate-pair-formation | NZ_CM001063_00039 | MPF_T | 54653 | 56812 | minus | 95.765 | 100 | 0 | 1391 |
| mate-pair-formation | NC_003277_00107 | MPF_F | 58469 | 61288 | minus | 99.894 | 100 | 0 | 1847 |
| mate-pair-formation | NC_019112_00045 | MPF_F | 61423 | 62667 | minus | 99.277 | 99 | 0 | 803 |
| mate-pair-formation | NC_017054_00100 | MPF_F | 64689 | 66053 | minus | 99.56 | 100 | 0 | 848 |
| mate-pair-formation | NC_017054_00100 | MPF_F | 66052 | 66513 | minus | 100 | 100 | 0 | 289 |
| mate-pair-formation | NC_017054_00098 | MPF_F | 66969 | 67604 | minus | 100 | 100 | 4.3299999999999996e-138 | 433 |
| mate-pair-formation | NC_017054_00096 | MPF_F | 67919 | 68908 | minus | 100 | 100 | 0 | 664 |
| mate-pair-formation | NC_017054_00095 | MPF_F | 68908 | 69537 | minus | 99.524 | 100 | 1.34e-136 | 428 |
| mate-pair-formation | NC_013437_00116 | MPF_T | 69898 | 72543 | minus | 99.66 | 100 | 0 | 1795 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 17 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |