Plasmid NZ_CP149969.1

Sequence

Nucleotide Information

Accession NZ_CP149969.1
Description Escherichia coli strain SLDY13 plasmid pSLDY13_mcr-1, complete sequence
Source refseq
Topology circular
Length 65846 bp
GC Content 0.43 %
Created at NCBI April 6, 2024



Biosample

Curated Collection Information
Accession 40590940

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 36N;117E
Original Query Type coordinates
Coordinates (Lat/Lon) 36.00/117.00
Address 石膏二分厂宿舍, Mazhuang, Daiyue District, Tai'an, Shandong, 271000, China

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query UTI
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP104622.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_MH213346.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_MW218147.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_CP041926.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MH213346.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_CP041926.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_MW218147.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_MH213346.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_CP041926.1 See Comparison
NZ_MW218147.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_MH213346.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_MW218147.1 See Comparison
NZ_CP041926.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_MH213346.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_MW218147.1 See Comparison
NZ_CP041926.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_MH213346.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_CP041926.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_MW218147.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_MH213346.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_MW218147.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_CP041926.1 See Comparison
NZ_CP041921.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2