Plasmid NZ_CP066368.1

Sequence

Nucleotide Information

Accession NZ_CP066368.1
Description Escherichia coli strain AR Bank #0346 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 66038 bp
GC Content 0.43 %
Created at NCBI March 26, 2021



Assembly

Genome Data Information

Accession GCF_017579865.1
Assembly Coverage 256


Biosample

Curated Collection Information
Accession 12263369

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Gastroenteritis, diarrhea, UTI, pneumonia, food poisoning
DOID/SYMP
  • Gastroenteritis (DOID:2326 )
    • A gastrointestinal system infectious disease that involves inflammation of the lining of the stomach and small and large intestines, which is caused by viruses, bacteria, or parasites. Chemicals and drugs also cause gastroenteritis. The symptoms include diarrhea, loss of appetite, nausea, vomiting, cramps, and discomfort in the abdomen.
  • Staphyloenterotoxemia (DOID:96 )
    • A primary bacterial infectious disease that results_in infection located_in intestine caused by eating food contaminated with enterotoxins produced by bacteria, has_material_basis_in Staphylococcus aureus. The infection has_symptom diarrhea, has_symptom vomiting, has_symptom nausea, has_symptom cramps, and has_symptom weakness.
    • Has_material_basis_in: ['staphylococcus aureus']
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
  • Pneumonia (DOID:552 )
    • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.
  • Diarrhea (DOID:13250 )
    • A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_KY657477.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_CP031550.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_CP019052.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_CP150077.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_CP031550.1 See Comparison
NZ_CP019052.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_CP150077.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_CP031550.1 See Comparison
NZ_CP150077.1 See Comparison
NZ_CP019052.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_CP019052.1 See Comparison
NZ_CP150077.1 See Comparison
NZ_CP031550.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_CP019052.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_CP031550.1 See Comparison
NZ_CP150077.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_CP019052.1 See Comparison
NZ_CP031550.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_CP150077.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_CP031550.1 See Comparison
NZ_CP019052.1 See Comparison
NZ_CP150077.1 See Comparison
NZ_CP149969.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusmcr-1.1copy
amrfinderplusblaCTX-M-55copy
PGAGrepAcopy
PGAGtype I toxin-antitoxin system Hok family toxincopy
PGAGProQ/FINO family proteincopy
PGAGhypothetical proteincopy
PGAGdivision plane positioning ATPase MipZcopy
PGAGJ domain-containing proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 88 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconAP017614IncI2661082plus10010001879
mate-pair-formationNC_020270_00058MPF_T4528147236minus98.1610001216
mate-pair-formationNC_019039_00051MPF_T4945850225minus99.6091002.91e-172533
mate-pair-formationNC_019039_00052MPF_T5022550956minus99.591004.55e-147460
mate-pair-formationNC_020270_00063MPF_T5112553479minus99.36310001562
mate-pair-formationNC_019039_00065MPF_T5987260864minus1001001.3e-179558
relaxaseMN232180_00018MOBP1895923269plus98.08910002785
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 7 of 7 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2