Plasmid NZ_CP066368.1

Sequence

Nucleotide Information

Accession NZ_CP066368.1
Description Escherichia coli strain AR Bank #0346 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 66038 bp
GC Content 0.43 %
Created at NCBI March 26, 2021



Assembly

Genome Data Information

Accession GCF_017579865.1
Assembly Coverage 256


Biosample

Curated Collection Information

Accession 12263369

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Gastroenteritis, diarrhea, UTI, pneumonia, food poisoning
DOID/SYMP
  • Gastroenteritis (DOID:2326 )
  • A gastrointestinal system infectious disease that involves inflammation of the lining of the stomach and small and large intestines, which is caused by viruses, bacteria, or parasites. Chemicals and drugs also cause gastroenteritis. The symptoms include diarrhea, loss of appetite, nausea, vomiting, cramps, and discomfort in the abdomen.
  • Staphyloenterotoxemia (DOID:96 )
  • A primary bacterial infectious disease that results_in infection located_in intestine caused by eating food contaminated with enterotoxins produced by bacteria, has_material_basis_in Staphylococcus aureus. The infection has_symptom diarrhea, has_symptom vomiting, has_symptom nausea, has_symptom cramps, and has_symptom weakness.
    • Has_material_basis_in: ['staphylococcus aureus']
  • Urinary tract infection (DOID:0080784 )
  • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
  • Pneumonia (DOID:552 )
  • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.
  • Diarrhea (DOID:13250 )
  • A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP104622.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_CP031550.1 See Comparison
NZ_CP019052.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_CP150077.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_CP031550.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_CP150077.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_CP019052.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_CP031550.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_CP019052.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_CP150077.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_CP150077.1 See Comparison
NZ_CP031550.1 See Comparison
NZ_CP019052.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_CP019052.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_CP031550.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_CP031550.1 See Comparison
NZ_CP150077.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_CP150077.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_CP019052.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MT773664.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore