Plasmid NZ_CP041921.1

Sequence

Nucleotide Information

Accession NZ_CP041921.1
Description Escherichia coli strain Ec40743 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 65845 bp
GC Content 0.43 %
Created at NCBI Aug. 2, 2019



Assembly

Genome Data Information

Accession GCF_007632435.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 12330870

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.24N;120.16E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.24/120.16
Address 吴山景区, 中河南路, 候潮门社区, 紫阳街道, Shangcheng District, Hangzhou City, Zhejiang, 310002, China

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query T12 vertebral Compression fracture
DOID/SYMP
  • Bone disease (DOID:0080001 )
    • A connective tissue disease that affects the structure or development of bone or causes an impairment of normal bone function.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP104622.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_MH213346.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_MW218147.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_CP041926.1 See Comparison
NZ_MH213346.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_MW218147.1 See Comparison
NZ_CP041926.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_MH213346.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_MW218147.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_CP041926.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_MH213346.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_MW218147.1 See Comparison
NZ_CP041926.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_MH213346.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_CP041926.1 See Comparison
NZ_MW218147.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_MH213346.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_CP104622.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_CP041926.1 See Comparison
NZ_CP041921.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_MW218147.1 See Comparison
NZ_CP066368.1 See Comparison
NZ_MH213346.1 See Comparison
NZ_CP149969.1 See Comparison
NZ_KY657477.1 See Comparison
NZ_MH522411.1 See Comparison
NZ_MG515249.1 See Comparison
NZ_KY802014.1 See Comparison
NZ_MW218147.1 See Comparison
NZ_CP041926.1 See Comparison
NZ_KX772778.1 See Comparison
NZ_MT773664.1 See Comparison
NZ_CP066368.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2