Plasmid NZ_CP140631.1

Sequence

Nucleotide Information

Accession NZ_CP140631.1
Description Shigella sonnei strain ST152 plasmid pSO87_sm013, complete sequence
Source refseq
Topology circular
Length 2579 bp
GC Content 0.51 %
Created at NCBI Jan. 7, 2024



Assembly

Genome Data Information

Accession GCF_034554795.1
Assembly Coverage 261


Biosample

Curated Collection Information

Accession 32329321

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 44.4912N;11.3615E
Original Query Type coordinates
Coordinates (Lat/Lon) 44.49/11.36
Address Accesso Ematologia, Cirenaica, San Donato-San Vitale, Bologna, Emilia-Romagna, 40125, Italy

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Sex male

DISEASE
Original Query Shigellosis
DOID/SYMP
  • Shigellosis (DOID:12385 )
  • A primary bacterial infectious disease that results_in infection located_in epithelium of colon, has_material_basis_in Shigella boydii, has_material_basis_in Shigella dysenteriae, has_material_basis_in Shigella flexneri, or has_material_basis_in Shigella sonnei, which produce toxins that can attack the lining of the large intestine, causing swelling, ulcers on the intestinal wall, and bloody diarrhea. The bacteria are transmitted_by ingestion of food and water contaminated with feces.
    • Has_material_basis_in: ['shigella boydii', 'shigella dysenteriae', 'shigella flexneri', 'shigella sonnei']

Visualization




Similar Plasmids

based on Mash distance

NZ_CP046339.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
CP066326.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP081669.1 See Comparison
NZ_CP081671.1 See Comparison
NZ_CP081668.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_CP070181.1 See Comparison
CP066326.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP081669.1 See Comparison
NZ_CP081671.1 See Comparison
NZ_CP081668.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP074027.1 See Comparison
CP066326.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP081669.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP081671.1 See Comparison
NZ_CP081668.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_AP027610.1 See Comparison
CP066326.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_CP081669.1 See Comparison
NZ_CP081671.1 See Comparison
NZ_CP081668.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_CP070181.1 See Comparison
CP066326.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP081668.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_CP081669.1 See Comparison
NZ_CP081671.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
NZ_CP073993.1 See Comparison
CP066326.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP081669.1 See Comparison
NZ_CP081671.1 See Comparison
NZ_CP081668.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_CP140631.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore