Plasmid NZ_CP140631.1

Sequence

Nucleotide Information

Accession NZ_CP140631.1
Description Shigella sonnei strain ST152 plasmid pSO87_sm013, complete sequence
Source refseq
Topology circular
Length 2579 bp
GC Content 0.51 %
Created at NCBI Jan. 7, 2024



Assembly

Genome Data Information

Accession GCF_034554795.1
Assembly Coverage 261


Biosample

Curated Collection Information
Accession 32329321

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 44.4912N;11.3615E
Original Query Type coordinates
Coordinates (Lat/Lon) 44.49/11.36
Address Accesso Ematologia, Cirenaica, San Donato-San Vitale, Bologna, Emilia-Romagna, 40125, Italy

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Sex male

DISEASE
Original Query Shigellosis
DOID/SYMP
  • Shigellosis (DOID:12385 )
    • A primary bacterial infectious disease that results_in infection located_in epithelium of colon, has_material_basis_in Shigella boydii, has_material_basis_in Shigella dysenteriae, has_material_basis_in Shigella flexneri, or has_material_basis_in Shigella sonnei, which produce toxins that can attack the lining of the large intestine, causing swelling, ulcers on the intestinal wall, and bloody diarrhea. The bacteria are transmitted_by ingestion of food and water contaminated with feces.
    • Has_material_basis_in: ['shigella boydii', 'shigella dysenteriae', 'shigella flexneri', 'shigella sonnei']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_AP027610.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
CP066326.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP081669.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP081671.1 See Comparison
NZ_CP081668.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
CP066326.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP081669.1 See Comparison
NZ_CP081671.1 See Comparison
NZ_CP081668.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_CP070181.1 See Comparison
NZ_CP039508.1 See Comparison
CP066326.1 See Comparison
NZ_CP081669.1 See Comparison
NZ_CP081671.1 See Comparison
NZ_CP081668.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP140631.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
NZ_OP038286.1 See Comparison
CP066326.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP081669.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP081671.1 See Comparison
NZ_CP081668.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
CP066326.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP081669.1 See Comparison
NZ_CP081669.1 See Comparison
NZ_CP081671.1 See Comparison
NZ_CP081668.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
CP066326.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP081671.1 See Comparison
NZ_CP081668.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
CP066326.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP081669.1 See Comparison
NZ_CP081671.1 See Comparison
NZ_CP081668.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP025247.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiQnrB59copy
rgiQnrB5copy
amrfinderplusqnrBcopy
PGAGquinolone resistance pentapeptide repeat protein QnrB19copy
PGAGhypothetical proteincopy
MOB-typerrep_cluster_2335copy
MOB-typerMOBPcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 7 of 7 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
Loading...
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTCP018223MOBP13931567minus1001002.5600000000000002e-86324
repliconKU302809_00001rep_cluster_233515452037plus92.51810706
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 2 of 2 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2