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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP039508.1
Sequence
Nucleotide Information
Accession
NZ_CP039508.1
Description
Salmonella enterica subsp. enterica serovar Worthington strain 7101.67 plasmid p7101_67-5, complete sequence
Source
refseq
Topology
circular
Length
2579 bp
GC Content
0.51 %
Created at NCBI
May 3, 2019
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Salmonella enterica (1160769)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Salmonella (590)
Species
Salmonella_enterica (28901)
Strain
Assembly
Genome Data Information
Accession
GCF_004923395.1
Assembly Coverage
40
Biosample
Curated Collection Information
Accession
11445819
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
46.947578N;7.423210E
Original Query Type
coordinates
Coordinates (Lat/Lon)
46.95/7.42
Address
Inselspital, 18, Freiburgstrasse, Holligen, Stadtteil III, Bern, Bern-Mittelland administrative district, Bernese Mittelland administrative region, Bern, 3010, Switzerland
ECOSYSTEM
Original Query
Homo sapiens,Stools
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
Host-associated Sex
male
DISEASE
Original Query
Diarrhea
DOID/SYMP
Diarrhea
(
DOID:13250
)
A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP039507.1
NZ_CP039506.1
NZ_CP039505.1
NZ_CP039504.1
Similar Plasmids
based on Mash distance
NZ_AP027610.1
See Comparison
NZ_CP140631.1
See Comparison
NZ_CP046339.1
See Comparison
NZ_CP069836.1
See Comparison
NZ_CP070181.1
See Comparison
CP066326.1
See Comparison
NZ_OP038286.1
See Comparison
NZ_OP038289.1
See Comparison
NZ_CP025247.1
See Comparison
NZ_CP073993.1
See Comparison
NZ_CP074027.1
See Comparison
NZ_CP073983.1
See Comparison
NZ_CP074017.1
See Comparison
NZ_CP081669.1
See Comparison
NZ_CP081671.1
See Comparison
NZ_CP081668.1
See Comparison
NZ_CP140631.1
See Comparison
NZ_AP027610.1
See Comparison
NZ_OP038286.1
See Comparison
NZ_CP046339.1
See Comparison
NZ_CP069836.1
See Comparison
NZ_CP070181.1
See Comparison
CP066326.1
See Comparison
NZ_OP038289.1
See Comparison
NZ_CP081669.1
See Comparison
NZ_CP073993.1
See Comparison
NZ_CP074027.1
See Comparison
NZ_CP073983.1
See Comparison
NZ_CP074017.1
See Comparison
NZ_CP081671.1
See Comparison
NZ_CP081668.1
See Comparison
NZ_CP069836.1
See Comparison
NZ_CP025247.1
See Comparison
NZ_CP140631.1
See Comparison
NZ_CP046339.1
See Comparison
NZ_CP070181.1
See Comparison
NZ_AP027610.1
See Comparison
NZ_CP039508.1
See Comparison
CP066326.1
See Comparison
NZ_CP073993.1
See Comparison
NZ_CP074027.1
See Comparison
NZ_CP073983.1
See Comparison
NZ_CP074017.1
See Comparison
NZ_CP081669.1
See Comparison
NZ_CP081671.1
See Comparison
NZ_CP081668.1
See Comparison
NZ_CP025247.1
See Comparison
NZ_OP038286.1
See Comparison
NZ_OP038289.1
See Comparison
NZ_CP046339.1
See Comparison
NZ_AP027610.1
See Comparison
NZ_CP140631.1
See Comparison
NZ_CP069836.1
See Comparison
NZ_CP070181.1
See Comparison
CP066326.1
See Comparison
NZ_CP025247.1
See Comparison
NZ_OP038286.1
See Comparison
NZ_OP038289.1
See Comparison
NZ_CP073993.1
See Comparison
NZ_CP074027.1
See Comparison
NZ_CP073983.1
See Comparison
NZ_CP074017.1
See Comparison
NZ_CP081669.1
See Comparison
NZ_CP081671.1
See Comparison
NZ_CP081668.1
See Comparison
NZ_CP140631.1
See Comparison
NZ_AP027610.1
See Comparison
NZ_CP081669.1
See Comparison
CP066326.1
See Comparison
NZ_OP038286.1
See Comparison
NZ_OP038289.1
See Comparison
NZ_CP046339.1
See Comparison
NZ_CP069836.1
See Comparison
NZ_CP070181.1
See Comparison
NZ_CP073993.1
See Comparison
NZ_CP074027.1
See Comparison
NZ_CP073983.1
See Comparison
NZ_CP074017.1
See Comparison
NZ_CP081671.1
See Comparison
NZ_CP081668.1
See Comparison
NZ_CP140631.1
See Comparison
NZ_CP025247.1
See Comparison
NZ_AP027610.1
See Comparison
NZ_CP025247.1
See Comparison
NZ_CP046339.1
See Comparison
NZ_CP073993.1
See Comparison
NZ_CP074027.1
See Comparison
NZ_CP073983.1
See Comparison
NZ_CP074017.1
See Comparison
NZ_CP069836.1
See Comparison
NZ_CP070181.1
See Comparison
CP066326.1
See Comparison
NZ_OP038286.1
See Comparison
NZ_OP038289.1
See Comparison
NZ_CP081669.1
See Comparison
NZ_CP081671.1
See Comparison
NZ_CP081668.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore