Plasmid CP066326.1

Sequence

Nucleotide Information

Accession CP066326.1
Description Salmonella enterica strain UWI_PP122 isolate CFSAN103840 plasmid pUWI-PP122.1, complete sequence
Source insd
Topology circular
Length 2579 bp
GC Content 0.51 %
Created at NCBI Dec. 17, 2020



Assembly

Genome Data Information

Accession GCA_015246635.2
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 16678602

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Trinidad and Tobago
Original Query Type name
Coordinates (Lat/Lon) 10.87/-60.98
Address Trinidad and Tobago

ECOSYSTEM
Original Query environmental,environment
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP046339.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP140631.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP140631.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_CP140631.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP140631.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
NZ_CP073993.1 See Comparison
CP066326.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP069836.1 See Comparison
NZ_CP070181.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_CP140631.1 See Comparison
NZ_CP046339.1 See Comparison
NZ_CP140631.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_CP070181.1 See Comparison
NZ_CP073993.1 See Comparison
NZ_OP038286.1 See Comparison
NZ_OP038289.1 See Comparison
NZ_CP074027.1 See Comparison
NZ_CP073983.1 See Comparison
NZ_CP074017.1 See Comparison
NZ_CP025247.1 See Comparison
NZ_CP039508.1 See Comparison
NZ_AP027610.1 See Comparison
NZ_CP140631.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2