Plasmid NZ_CP137402.1
Sequence
Nucleotide Information
| Accession | NZ_CP137402.1 |
|---|---|
| Description | Klebsiella pneumoniae strain KP119_WM3_21.23_ST147_NDM1 plasmid unnamed5, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 8104 bp |
| GC Content | 0.54 % |
| Created at NCBI | Nov. 4, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 37951961 |
|---|
PLASMID INFORMATION
| Genotype | ST147 |
|---|
GEOGRAPHICAL INFORMATION
| Original Query | United Kingdom,England |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 52.80/-0.54 |
| Address | United Kingdom,England |
ECOSYSTEM
| Original Query | Homo sapiens,pure culture,pooled swabs |
|---|---|
| Classification | cell_culture,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | MOBP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 15 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | CP041116_00002 | ColRNAI_rep_cluster_1987 | 3074 | 3555 | minus | 88.501 | 92 | 5.96e-162 | 577 |
| replicon | CP041116_00002 | ColRNAI_rep_cluster_1987 | 7126 | 7607 | minus | 88.501 | 92 | 5.96e-162 | 577 |
| relaxase | NC_016979_00005 | MOBP | 83 | 1588 | plus | 94.223 | 100 | 0 | 907 |
| relaxase | NC_016979_00005 | MOBP | 4135 | 5640 | plus | 94.223 | 100 | 0 | 907 |
| relaxase | NC_001848_00006 | MOBP | 7877 | 8104 | plus | 88.312 | 100 | 2.95e-38 | 142 |
| oriT | CP016722 | MOB_unknown | 3537 | 3717 | plus | 93.407 | 83 | 1.57e-69 | 268 |
| oriT | CP016722 | MOB_unknown | 7589 | 7769 | plus | 93.407 | 83 | 1.57e-69 | 268 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 7 of 7 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |