Plasmid NZ_CP137341.1
Sequence
Nucleotide Information
| Accession | NZ_CP137341.1 |
|---|---|
| Description | Klebsiella pneumoniae strain H8451 plasmid pH8451-1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 206718 bp |
| GC Content | 0.53 % |
| Created at NCBI | Nov. 4, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 37954806 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 40.03N;116.42E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 40.03/116.42 |
| Address | 北卫新园, Aoyuncun, Laiguangying, Chaoyang District, Beijing, 102218, China |
ECOSYSTEM
| Original Query | Homo sapiens |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| rgi | Mrx | copy | ||
| amrfinderplus | clpK | copy | ||
| rgi | mphA | copy | ||
| rgi | aadA2 | copy | ||
| amrfinderplus | pcoS | copy | ||
| amrfinderplus | sul1 | copy | ||
| amrfinderplus | pcoD | copy | ||
| amrfinderplus | pcoR | copy | ||
| amrfinderplus | qacEdelta1 | copy | ||
| amrfinderplus | silC | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 231 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_021502_00150 | MPF_T | 123873 | 126179 | minus | 99.351 | 100 | 0 | 1449 |
| mate-pair-formation | NC_014312_00141 | MPF_F | 128798 | 131617 | minus | 100 | 100 | 0 | 1882 |
| mate-pair-formation | NC_019165_00034 | MPF_F | 131620 | 132975 | minus | 95.575 | 99 | 0 | 801 |
| mate-pair-formation | NC_021654_00016 | MPF_F | 135869 | 137830 | minus | 98.318 | 98 | 0 | 1234 |
| mate-pair-formation | NC_019389_00080 | MPF_F | 137883 | 138518 | minus | 97.642 | 100 | 1.84e-136 | 428 |
| mate-pair-formation | NC_022609_00081 | MPF_F | 138534 | 139520 | minus | 91.818 | 100 | 0 | 614 |
| mate-pair-formation | NC_014312_00128 | MPF_F | 139956 | 140588 | minus | 100 | 100 | 1.31e-126 | 400 |
| mate-pair-formation | NC_021502_00131 | MPF_T | 140980 | 143616 | minus | 97.042 | 100 | 0 | 1762 |
| mate-pair-formation | NC_019389_00068 | MPF_F | 146327 | 146842 | minus | 94.186 | 89 | 3.73e-104 | 335 |
| mate-pair-formation | NC_023332_00154 | MPF_F | 147523 | 148944 | minus | 99.578 | 100 | 0 | 788 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 17 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |