Plasmid NZ_CP066896.1

Sequence

Nucleotide Information

Accession NZ_CP066896.1
Description Klebsiella pneumoniae strain XHKP75 plasmid pXHKP75-1, complete sequence
Source refseq
Topology circular
Length 205681 bp
GC Content 0.53 %
Created at NCBI July 22, 2022



Assembly

Genome Data Information

Accession GCF_024346735.1
Assembly Coverage 383


Biosample

Curated Collection Information
Accession 17173614

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.21N;121.45E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.21/121.45
Address Taiyuan Road, 小木桥, Tianpinglu, Xuhui District, Shanghai, 200031, China

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Septic shock, multiple organ failure
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP097628.1 See Comparison
NZ_CP043359.1 See Comparison
NZ_CP036302.1 See Comparison
NZ_CP033402.1 See Comparison
NZ_CP137341.1 See Comparison
NZ_CP127237.1 See Comparison
NZ_CP039809.1 See Comparison
NZ_CP107413.1 See Comparison
NZ_CP066525.1 See Comparison
CP046969.1 See Comparison
NZ_CP107469.1 See Comparison
NZ_CP107514.1 See Comparison
NZ_CP107399.1 See Comparison
NZ_CP107479.1 See Comparison
NZ_CP107499.1 See Comparison
NZ_CP107419.1 See Comparison
NZ_CP107519.1 See Comparison
NZ_CP107459.1 See Comparison
NZ_CP107474.1 See Comparison
NZ_CP107504.1 See Comparison
NZ_CP107437.1 See Comparison
NZ_CP107489.1 See Comparison
NZ_CP107494.1 See Comparison
NZ_CP043359.1 See Comparison
NZ_CP107427.1 See Comparison
NZ_CP097628.1 See Comparison
NZ_CP107509.1 See Comparison
NZ_CP107448.1 See Comparison
NZ_CP107442.1 See Comparison
NZ_CP107484.1 See Comparison
NZ_CP036302.1 See Comparison
NZ_CP033402.1 See Comparison
NZ_CP137341.1 See Comparison
NZ_CP039809.1 See Comparison
NZ_CP127237.1 See Comparison
NZ_CP066525.1 See Comparison
NZ_CP107469.1 See Comparison
NZ_CP107479.1 See Comparison
NZ_CP107419.1 See Comparison
NZ_CP107519.1 See Comparison
NZ_CP107504.1 See Comparison
NZ_CP107514.1 See Comparison
NZ_CP107399.1 See Comparison
NZ_CP107499.1 See Comparison
NZ_CP107459.1 See Comparison
NZ_CP107474.1 See Comparison
NZ_CP107509.1 See Comparison
NZ_CP107448.1 See Comparison
NZ_CP107442.1 See Comparison
NZ_CP107484.1 See Comparison
NZ_CP107437.1 See Comparison
NZ_CP107489.1 See Comparison
NZ_CP107494.1 See Comparison
NZ_CP107427.1 See Comparison
NZ_CP097628.1 See Comparison
CP046969.1 See Comparison
NZ_CP107413.1 See Comparison
NZ_CP043359.1 See Comparison
NZ_CP127237.1 See Comparison
NZ_CP036302.1 See Comparison
NZ_CP033402.1 See Comparison
NZ_CP137341.1 See Comparison
NZ_CP107509.1 See Comparison
NZ_CP107399.1 See Comparison
NZ_CP107499.1 See Comparison
NZ_CP039809.1 See Comparison
NZ_CP066525.1 See Comparison
CP046969.1 See Comparison
NZ_CP107413.1 See Comparison
NZ_CP107469.1 See Comparison
NZ_CP107448.1 See Comparison
NZ_CP107442.1 See Comparison
NZ_CP107484.1 See Comparison
NZ_CP107437.1 See Comparison
NZ_CP107479.1 See Comparison
NZ_CP107419.1 See Comparison
NZ_CP107489.1 See Comparison
NZ_CP107519.1 See Comparison
NZ_CP107504.1 See Comparison
NZ_CP107459.1 See Comparison
NZ_CP107474.1 See Comparison
NZ_CP107494.1 See Comparison
NZ_CP107514.1 See Comparison
NZ_CP107427.1 See Comparison
NZ_CP039809.1 See Comparison
NZ_CP043359.1 See Comparison
NZ_CP036302.1 See Comparison
NZ_CP033402.1 See Comparison
NZ_CP137341.1 See Comparison
NZ_CP127237.1 See Comparison
NZ_CP097628.1 See Comparison
NZ_CP107479.1 See Comparison
CP046969.1 See Comparison
NZ_CP107413.1 See Comparison
NZ_CP107469.1 See Comparison
NZ_CP107499.1 See Comparison
NZ_CP107459.1 See Comparison
NZ_CP107474.1 See Comparison
NZ_CP107437.1 See Comparison
NZ_CP107489.1 See Comparison
NZ_CP107494.1 See Comparison
NZ_CP033402.1 See Comparison
NZ_CP066525.1 See Comparison
NZ_CP107479.1 See Comparison
NZ_CP107419.1 See Comparison
NZ_CP107519.1 See Comparison
NZ_CP107504.1 See Comparison
NZ_CP107514.1 See Comparison
NZ_CP107399.1 See Comparison
NZ_CP107509.1 See Comparison
NZ_CP107448.1 See Comparison
NZ_CP107442.1 See Comparison
NZ_CP107484.1 See Comparison
NZ_CP107427.1 See Comparison
NZ_CP097628.1 See Comparison
NZ_CP043359.1 See Comparison
NZ_CP036302.1 See Comparison
NZ_CP137341.1 See Comparison
NZ_CP127237.1 See Comparison
NZ_CP039809.1 See Comparison
NZ_CP066525.1 See Comparison
CP046969.1 See Comparison
NZ_CP107413.1 See Comparison
NZ_CP107469.1 See Comparison
NZ_CP107419.1 See Comparison
NZ_CP107519.1 See Comparison
NZ_CP107459.1 See Comparison
NZ_CP107504.1 See Comparison
NZ_CP107474.1 See Comparison
NZ_CP107514.1 See Comparison
NZ_CP107399.1 See Comparison
NZ_CP107499.1 See Comparison
NZ_CP107448.1 See Comparison
NZ_CP107509.1 See Comparison
NZ_CP107442.1 See Comparison
NZ_CP107437.1 See Comparison
NZ_CP107484.1 See Comparison
NZ_CP097628.1 See Comparison
NZ_CP107489.1 See Comparison
NZ_CP107494.1 See Comparison
NZ_CP107427.1 See Comparison
NZ_CP033402.1 See Comparison
NZ_CP043359.1 See Comparison
NZ_CP036302.1 See Comparison
NZ_CP107419.1 See Comparison
NZ_CP137341.1 See Comparison
NZ_CP127237.1 See Comparison
NZ_CP039809.1 See Comparison
NZ_CP066525.1 See Comparison
CP046969.1 See Comparison
NZ_CP107413.1 See Comparison
NZ_CP107519.1 See Comparison
NZ_CP107469.1 See Comparison
NZ_CP107479.1 See Comparison
NZ_CP107504.1 See Comparison
NZ_CP107459.1 See Comparison
NZ_CP107514.1 See Comparison
NZ_CP107474.1 See Comparison
NZ_CP107399.1 See Comparison
NZ_CP107499.1 See Comparison
NZ_CP107448.1 See Comparison
NZ_CP107442.1 See Comparison
NZ_CP107509.1 See Comparison
NZ_CP107484.1 See Comparison
NZ_CP107437.1 See Comparison
NZ_CP043359.1 See Comparison
NZ_CP107489.1 See Comparison
NZ_CP107494.1 See Comparison
NZ_CP107427.1 See Comparison
NZ_CP097628.1 See Comparison
NZ_CP036302.1 See Comparison
NZ_CP033402.1 See Comparison
NZ_CP137341.1 See Comparison
NZ_CP066525.1 See Comparison
NZ_CP039809.1 See Comparison
NZ_CP127237.1 See Comparison
NZ_CP107479.1 See Comparison
NZ_CP107419.1 See Comparison
NZ_CP107504.1 See Comparison
NZ_CP107499.1 See Comparison
CP046969.1 See Comparison
NZ_CP107413.1 See Comparison
NZ_CP107469.1 See Comparison
NZ_CP107519.1 See Comparison
NZ_CP107514.1 See Comparison
NZ_CP107399.1 See Comparison
NZ_CP107459.1 See Comparison
NZ_CP107474.1 See Comparison
NZ_CP107509.1 See Comparison
NZ_CP107448.1 See Comparison
NZ_CP107442.1 See Comparison
NZ_CP107484.1 See Comparison
NZ_CP107437.1 See Comparison
NZ_CP107489.1 See Comparison
NZ_CP107494.1 See Comparison
NZ_CP107427.1 See Comparison
NZ_CP066896.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2