Plasmid NZ_CP134392.1

Sequence

Nucleotide Information

Accession NZ_CP134392.1
Description Escherichia coli strain TUM10828 plasmid pMTY10828_IncI1-I, complete sequence
Source refseq
Topology circular
Length 90263 bp
GC Content 0.50 %
Created at NCBI Sept. 22, 2023



Assembly

Genome Data Information

Accession GCF_031665995.1
Assembly Coverage 165


Biosample

Curated Collection Information
Accession 37323655

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query Homo sapiens,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query healthy
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP134381.1 See Comparison
NZ_CP133914.1 See Comparison
NZ_CP134355.1 See Comparison
NZ_CP134372.1 See Comparison
NZ_CP134365.1 See Comparison
LC567099.1 See Comparison
LC567088.1 See Comparison
LC567087.1 See Comparison
LC567086.1 See Comparison
LC567085.1 See Comparison
LC567053.1 See Comparison
NZ_AP017892.1 See Comparison
NZ_AP017892.1 See Comparison
NZ_AP022122.1 See Comparison
NZ_CP133914.1 See Comparison
NZ_CP134381.1 See Comparison
NZ_CP134355.1 See Comparison
NZ_CP134372.1 See Comparison
NZ_CP134365.1 See Comparison
LC567099.1 See Comparison
LC567088.1 See Comparison
LC567087.1 See Comparison
LC567086.1 See Comparison
LC567085.1 See Comparison
LC567053.1 See Comparison
LC567086.1 See Comparison
NZ_CP134381.1 See Comparison
NZ_CP134355.1 See Comparison
NZ_CP134372.1 See Comparison
NZ_CP134365.1 See Comparison
NZ_AP022122.1 See Comparison
NZ_CP133914.1 See Comparison
LC567085.1 See Comparison
LC567053.1 See Comparison
NZ_CP134381.1 See Comparison
LC567099.1 See Comparison
LC567088.1 See Comparison
LC567087.1 See Comparison
NZ_CP133914.1 See Comparison
NZ_CP134365.1 See Comparison
NZ_AP017892.1 See Comparison
NZ_AP022122.1 See Comparison
NZ_CP134355.1 See Comparison
NZ_CP134372.1 See Comparison
NZ_CP134392.1 See Comparison
NZ_CP134381.1 See Comparison
LC567099.1 See Comparison
LC567088.1 See Comparison
LC567087.1 See Comparison
LC567086.1 See Comparison
LC567085.1 See Comparison
LC567053.1 See Comparison
NZ_AP017892.1 See Comparison
NZ_CP133914.1 See Comparison
NZ_AP022122.1 See Comparison
NZ_CP134365.1 See Comparison
NZ_CP134355.1 See Comparison
NZ_CP134372.1 See Comparison
LC567099.1 See Comparison
LC567088.1 See Comparison
LC567087.1 See Comparison
LC567086.1 See Comparison
LC567085.1 See Comparison
LC567053.1 See Comparison
NZ_CP133914.1 See Comparison
NZ_AP017892.1 See Comparison
NZ_AP022122.1 See Comparison
NZ_CP134365.1 See Comparison
LC567099.1 See Comparison
LC567088.1 See Comparison
LC567087.1 See Comparison
LC567086.1 See Comparison
LC567085.1 See Comparison
LC567053.1 See Comparison
NZ_AP017892.1 See Comparison
NZ_CP134381.1 See Comparison
NZ_CP134355.1 See Comparison
NZ_CP134372.1 See Comparison
NZ_AP022122.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore