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v. 2024_05_31_v2
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Antimicrobial Resistance Genes
Typing
Plasmid NZ_CP134372.1
Sequence
Nucleotide Information
Accession
NZ_CP134372.1
Description
Escherichia coli strain TUM12357 plasmid pMTY12357_IncI1-I, complete sequence
Source
refseq
Topology
circular
Length
90769 bp
GC Content
0.50 %
Created at NCBI
Sept. 22, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_031663975.1
Assembly Coverage
107
Biosample
Curated Collection Information
Accession
37323659
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Japan
Original Query Type
name
Coordinates (Lat/Lon)
36.57/139.24
Address
Japan
ECOSYSTEM
Original Query
Chicken,Brazilian imported chicken meats
Classification
food,host_associated,meat
Host-associated Taxon
Gallus gallus (
9031
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP134375.1
NZ_CP134374.1
NZ_CP134373.1
NZ_CP134371.1
Similar Plasmids
based on Mash distance
NZ_CP133914.1
See Comparison
NZ_CP134386.1
See Comparison
NZ_CP134365.1
See Comparison
LC567099.1
See Comparison
NZ_CP134355.1
See Comparison
NZ_CP134392.1
See Comparison
LC567099.1
See Comparison
LC567088.1
See Comparison
LC567087.1
See Comparison
LC567086.1
See Comparison
LC567085.1
See Comparison
LC567073.1
See Comparison
LC567053.1
See Comparison
NZ_AP022097.1
See Comparison
NZ_CP133914.1
See Comparison
NZ_CP134355.1
See Comparison
NZ_CP134372.1
See Comparison
NZ_CP134392.1
See Comparison
NZ_CP134386.1
See Comparison
NZ_CP134365.1
See Comparison
NZ_AP017892.1
See Comparison
LC567088.1
See Comparison
LC567087.1
See Comparison
LC567086.1
See Comparison
LC567085.1
See Comparison
LC567073.1
See Comparison
LC567053.1
See Comparison
LC567099.1
See Comparison
NZ_AP017892.1
See Comparison
NZ_AP022097.1
See Comparison
NZ_CP133914.1
See Comparison
LC567088.1
See Comparison
LC567087.1
See Comparison
LC567086.1
See Comparison
LC567085.1
See Comparison
LC567073.1
See Comparison
LC567053.1
See Comparison
NZ_AP017892.1
See Comparison
NZ_CP133914.1
See Comparison
NZ_CP134355.1
See Comparison
NZ_CP134392.1
See Comparison
NZ_CP134386.1
See Comparison
NZ_CP134365.1
See Comparison
NZ_CP134355.1
See Comparison
NZ_CP134392.1
See Comparison
NZ_CP134386.1
See Comparison
NZ_CP134365.1
See Comparison
LC567099.1
See Comparison
NZ_AP022097.1
See Comparison
LC567053.1
See Comparison
LC567088.1
See Comparison
LC567087.1
See Comparison
LC567086.1
See Comparison
LC567085.1
See Comparison
LC567073.1
See Comparison
NZ_CP133914.1
See Comparison
NZ_AP017892.1
See Comparison
NZ_AP022097.1
See Comparison
LC567099.1
See Comparison
LC567099.1
See Comparison
LC567088.1
See Comparison
LC567087.1
See Comparison
LC567086.1
See Comparison
LC567085.1
See Comparison
LC567073.1
See Comparison
LC567053.1
See Comparison
NZ_CP134355.1
See Comparison
NZ_CP134392.1
See Comparison
NZ_CP134386.1
See Comparison
NZ_CP134365.1
See Comparison
NZ_AP017892.1
See Comparison
NZ_AP022097.1
See Comparison
NZ_CP133914.1
See Comparison
NZ_CP134355.1
See Comparison
NZ_CP134392.1
See Comparison
NZ_CP134386.1
See Comparison
NZ_CP134365.1
See Comparison
LC567088.1
See Comparison
LC567087.1
See Comparison
LC567086.1
See Comparison
LC567085.1
See Comparison
LC567073.1
See Comparison
LC567053.1
See Comparison
NZ_AP017892.1
See Comparison
NZ_AP022097.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore