Plasmid NZ_AP017892.1

Sequence

Nucleotide Information

Accession NZ_AP017892.1
Description Escherichia coli strain N23 plasmid pN23, complete sequence
Source refseq
Topology circular
Length 91831 bp
GC Content 0.50 %
Created at NCBI June 26, 2020



Biosample

Curated Collection Information
Accession 14228739

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP


Similar Plasmids

based on Mash distance

NZ_CP133914.1 See Comparison
LC567099.1 See Comparison
NZ_CP134355.1 See Comparison
NZ_CP134372.1 See Comparison
NZ_CP134392.1 See Comparison
NZ_CP134386.1 See Comparison
NZ_CP134365.1 See Comparison
LC567088.1 See Comparison
LC567087.1 See Comparison
LC567086.1 See Comparison
LC567085.1 See Comparison
LC567073.1 See Comparison
LC567053.1 See Comparison
NZ_AP022097.1 See Comparison
NZ_CP134386.1 See Comparison
NZ_CP134355.1 See Comparison
NZ_CP134372.1 See Comparison
NZ_CP134392.1 See Comparison
LC567099.1 See Comparison
LC567088.1 See Comparison
LC567087.1 See Comparison
LC567086.1 See Comparison
LC567085.1 See Comparison
LC567073.1 See Comparison
LC567053.1 See Comparison
NZ_AP017892.1 See Comparison
NZ_CP133914.1 See Comparison
NZ_CP133914.1 See Comparison
NZ_CP134386.1 See Comparison
NZ_CP134365.1 See Comparison
NZ_AP022097.1 See Comparison
NZ_CP134365.1 See Comparison
NZ_AP022097.1 See Comparison
NZ_CP134355.1 See Comparison
NZ_CP134372.1 See Comparison
NZ_CP134392.1 See Comparison
LC567099.1 See Comparison
LC567088.1 See Comparison
LC567087.1 See Comparison
LC567086.1 See Comparison
LC567085.1 See Comparison
LC567073.1 See Comparison
LC567053.1 See Comparison
NZ_CP134355.1 See Comparison
NZ_CP133914.1 See Comparison
NZ_CP134372.1 See Comparison
NZ_CP134392.1 See Comparison
NZ_CP134386.1 See Comparison
NZ_CP134365.1 See Comparison
LC567099.1 See Comparison
NZ_CP133914.1 See Comparison
LC567099.1 See Comparison
LC567088.1 See Comparison
LC567087.1 See Comparison
LC567086.1 See Comparison
LC567085.1 See Comparison
LC567073.1 See Comparison
LC567053.1 See Comparison
NZ_AP022097.1 See Comparison
NZ_CP134355.1 See Comparison
NZ_CP134372.1 See Comparison
NZ_CP134392.1 See Comparison
NZ_CP134386.1 See Comparison
NZ_CP134365.1 See Comparison
LC567088.1 See Comparison
LC567087.1 See Comparison
LC567086.1 See Comparison
LC567085.1 See Comparison
LC567073.1 See Comparison
LC567053.1 See Comparison
NZ_AP022097.1 See Comparison
LC567099.1 See Comparison
NZ_CP134355.1 See Comparison
NZ_CP134372.1 See Comparison
NZ_CP134392.1 See Comparison
NZ_CP134386.1 See Comparison
NZ_CP134365.1 See Comparison
NZ_CP133914.1 See Comparison
LC567088.1 See Comparison
LC567087.1 See Comparison
LC567086.1 See Comparison
LC567085.1 See Comparison
LC567073.1 See Comparison
LC567053.1 See Comparison
NZ_AP022097.1 See Comparison
NZ_AP022097.1 See Comparison
NZ_CP133914.1 See Comparison
NZ_CP134355.1 See Comparison
NZ_CP134372.1 See Comparison
NZ_CP134392.1 See Comparison
NZ_CP134386.1 See Comparison
NZ_CP134365.1 See Comparison
LC567099.1 See Comparison
LC567088.1 See Comparison
LC567087.1 See Comparison
LC567086.1 See Comparison
LC567085.1 See Comparison
LC567073.1 See Comparison
LC567053.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaCTX-M-8copy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGRpn family recombination-promoting nuclease/putative transposasecopy
PGAGhypothetical proteincopy
PGAGhelix-turn-helix transcriptional regulatorcopy
PGAGhypothetical proteincopy
PGAGDUF4942 domain-containing proteincopy
PGAGmolybdopterin-guanine dinucleotide biosynthesis protein MobCcopy
PGAGnikAcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 111 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTHM021326MOBP41254217minus1001004.37e-41172
repliconKM409652IncI-gamma/K15763758668plus10010001906
relaxaseNC_019097MOBP45877280plus95.19901684
mate-pair-formationNC_019097_00056MPF_I73539614minus98.6749201444
mate-pair-formationNC_022267_00057MPF_I1805819257minus97.251000751
mate-pair-formationNC_019111_00038MPF_I2403524412minus100942.5999999999999997e-47169
mate-pair-formationNC_023290_00086MPF_I2446624990minus99.4291003.4000000000000003e-100322
mate-pair-formationNC_015965_00072MPF_I2499325694minus98.7181006.45e-152473
mate-pair-formationNC_019097_00075MPF_I2698927969minus99.6941000656
mate-pair-formationNC_022267_00069MPF_I2802528672minus99.074915.71e-143448
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2