Plasmid NZ_CP133400.1

Sequence

Nucleotide Information

Accession NZ_CP133400.1
Description Salmonella enterica subsp. enterica serovar Rissen strain D15 plasmid unnamed3, complete sequence
Source refseq
Topology circular
Length 4657 bp
GC Content 0.52 %
Created at NCBI Sept. 8, 2023



Assembly

Genome Data Information

Accession GCF_031174645.1
Assembly Coverage 1


Biosample

Curated Collection Information
Accession 37147803

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 16.056247N;103.653095E
Original Query Type coordinates
Coordinates (Lat/Lon) 16.06/103.65
Address Lower Walkway, Roi Et, Niwet, Roi Et Province, 45000, Thailand

ECOSYSTEM
Original Query Swine intestine
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP043510.1 See Comparison
NZ_CP063336.1 See Comparison
NZ_CP103775.1 See Comparison
NZ_OR126578.1 See Comparison
NZ_CP102759.1 See Comparison
NZ_CP092914.1 See Comparison
NZ_CP133400.1 See Comparison
NZ_CP133424.1 See Comparison
NZ_CP133288.1 See Comparison
CP082458.1 See Comparison
NZ_CP103775.1 See Comparison
NZ_CP043510.1 See Comparison
NZ_CP063336.1 See Comparison
NZ_CP043510.1 See Comparison
NZ_CP102759.1 See Comparison
NZ_CP133424.1 See Comparison
NZ_CP133288.1 See Comparison
NZ_CP092914.1 See Comparison
CP082458.1 See Comparison
NZ_OR126578.1 See Comparison
NZ_CP063336.1 See Comparison
NZ_CP103775.1 See Comparison
NZ_CP092914.1 See Comparison
NZ_OR126578.1 See Comparison
NZ_CP043510.1 See Comparison
NZ_CP063336.1 See Comparison
NZ_CP102759.1 See Comparison
CP082458.1 See Comparison
NZ_CP133424.1 See Comparison
NZ_CP133288.1 See Comparison
NZ_CP102759.1 See Comparison
NZ_CP103775.1 See Comparison
NZ_CP092914.1 See Comparison
CP082458.1 See Comparison
CP082458.1 See Comparison
NZ_CP133424.1 See Comparison
NZ_CP133288.1 See Comparison
NZ_OR126578.1 See Comparison
NZ_CP043510.1 See Comparison
NZ_CP063336.1 See Comparison
NZ_CP103775.1 See Comparison
NZ_CP102759.1 See Comparison
NZ_CP092914.1 See Comparison
NZ_CP063336.1 See Comparison
NZ_CP043510.1 See Comparison
NZ_CP133424.1 See Comparison
NZ_CP133288.1 See Comparison
NZ_OR126578.1 See Comparison
CP082458.1 See Comparison
NZ_CP103775.1 See Comparison
NZ_CP092914.1 See Comparison
NZ_CP102759.1 See Comparison
NZ_CP133424.1 See Comparison
NZ_CP133288.1 See Comparison
NZ_OR126578.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore