Plasmid NZ_CP133288.1
Sequence
Nucleotide Information
| Accession | NZ_CP133288.1 |
|---|---|
| Description | Salmonella enterica subsp. enterica serovar Rissen strain D7 plasmid p_unname3, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 4657 bp |
| GC Content | 0.52 % |
| Created at NCBI | Sept. 8, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (399587) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Biosample
Curated Collection Information
| Accession | 37128092 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 16.05382N;103.652004E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 16.05/103.65 |
| Address | Thewaphiban Road, Roi Et, Niwet, Roi Et Province, 45000, Thailand |
ECOSYSTEM
| Original Query | Swine liver |
|---|---|
| Classification | host_associated,liver |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
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B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| MOB-typer | rep_cluster_2358 | copy | ||
| MOB-typer | MOBP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 8 of 8 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | CP000974_00005 | rep_cluster_2358 | 4130 | 4611 | minus | 89.178 | 94 | 2.78e-170 | 604 |
| relaxase | NC_013090_00004 | MOBP | 723 | 2219 | plus | 91.583 | 100 | 0 | 884 |
| oriT | CP016722 | MOB_unknown | 122 | 306 | plus | 85.561 | 86 | 2.7100000000000003e-47 | 195 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |